PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G114900.1
Common NameB456_011G114900, LOC105775062
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 269aa    MW: 29293.3 Da    PI: 9.6268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G114900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19134183255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrd +     + +r++lg+f tae Aa a+++a++ ++g
  Gorai.011G114900.1 134 RYRGVRRRP-WGKWAAEIRDpF-----KaARVWLGTFHTAEAAAMAYDEAALGFRG 183
                         7********.**********66.....56**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-33134197IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22134192IPR016177DNA-binding domain
PfamPF008474.1E-12134183IPR001471AP2/ERF domain
PROSITE profilePS5103224.75134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-31134192IPR001471AP2/ERF domain
PRINTSPR003675.1E-11135146IPR001471AP2/ERF domain
CDDcd000182.45E-13142193No hitNo description
PRINTSPR003675.1E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKREEGSWSS SSVRREREMR AVVSALTHVV AGEELVADNE NLDGFGSCIG DNDAASTWRR  60
SRQKRGREQL EEKEKEGSSS GSGSRGGNFR RRGGGYSSSA AVQDTGAEAN TRAQLAPTYE  120
YKSNEKYKEE AGRRYRGVRR RPWGKWAAEI RDPFKAARVW LGTFHTAEAA AMAYDEAALG  180
FRGNKAKLNF PENVKLRSPP SNLTTTLLPV FDSPNTLLSI PTILHSQCHD TLVQNPQVSS  240
TSIGSHAQSC SSPSTSVFPI QGGGFGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22132194366ATERF1
3gcc_A4e-22132194366ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964RSRQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453056.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0D2RKS30.0A0A0D2RKS3_GOSRA; Uncharacterized protein
STRINGGorai.011G114900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-22ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]