PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G122800.3

Common Name

B456_011G122800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 281aa MW: 30399.3 Da PI: 5.5722

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G122800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	2	41	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Gorai.011G122800.3 2 QEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 41 69************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.978	1	45	IPR017930	Myb domain
CDD	cd00167	1.32E-11	2	41	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-20	2	42	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-9	2	43	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.54E-12	2	47	IPR009057	Homeodomain-like
Pfam	PF00249	9.5E-14	2	41	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MQEEQTIIQL HALLGNRWSA IATHLPKRTD NEIKNYWNTH LKKRLAKLGI DPITHKPKSD 60 ALLSTDAQSK SAANLSHMAQ WESARLEAEA RLVRESKLRS HSHSFQHRLT RPPTAAFASS 120 AGRLVNKTAW NSTAGWSKSS EVNNGVVNNG FGDLESPKST LTSSENGVGL SSMGMPDFVG 180 TASASSEIKQ EGEQEWKGFG SSTNLAMENG FNDIGNAMED GFINLLLNDS TDPSLSDSGK 240 ESDGNSGDGT ASDDHYEDNK NYWNSILDLV NSSPSGSPMF *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269\|PubMed:23709630}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457053.1	0.0	PREDICTED: transcription repressor MYB6-like
Swissprot	Q9LXF1	4e-70	MYB16_ARATH; Transcription factor MYB16
TrEMBL	A0A0D2UT01	0.0	A0A0D2UT01_GOSRA; Uncharacterized protein
STRING	Gorai.011G122800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-72	myb domain protein 16

Link Out ? help Back to Top
Phytozome	Gorai.011G122800.3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]