PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G135700.1

Common Name

B456_011G135700, LOC105776836

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 167aa MW: 18574.2 Da PI: 8.8007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G135700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.2e-06	49	88	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ +L++l+ + +K + a++L +A+eYI+ L Gorai.011G135700.1 49 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 88 78999999********999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.0E-9	38	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.674	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	41	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.53E-5	49	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MQTLYSCSEN GIEVRTMMEN KRSPCSVDHG SFTPLASKRQ KSDLSISTKD RKDKVGERIV 60 TLQQLVSPYG KTDTASVLLQ AMEYIQFLHE QVKVLSAPYL QTSPTNNMQA SIKPAQELEH 120 YSLRSQGLCL VPLSYTMGVV HSNGADIWAP IKTTSPKFDK PFSQFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455220.1	1e-123	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q7XJU2	1e-59	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A0D2UJK1	1e-121	A0A0D2UJK1_GOSRA; Uncharacterized protein
STRING	Gorai.011G135700.1	1e-122	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	5e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G135700.1
Entrez Gene	105776836

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]