PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G141900.1

Common Name

B456_011G141900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 244aa MW: 28617.2 Da PI: 6.7991

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G141900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	5e-27	77	168	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e+ +k +++ ++r+ tr gC+a+l++ ++ gkw+++ +++eHnH l+ Gorai.011G141900.1 77 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKYTKkETRVFTSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHVLN 167 6***************************************99888233444699******************************997 PP FAR1 91 p 91 p Gorai.011G141900.1 168 P 168 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-24	77	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
FVMASTSNPE LNTSRNYRQW LTETFDGHEM LDDELSDSNL DGNGNLINPL DQHFPMTMEH 60 REPYIGMEFE SAEDAREFYE MYGRRMGFTI RNNRTRRSLK DNSIIGREFV CSKEGFRAEK 120 YTKKETRVFT SRPATREGCN AMLRIAAKDG GKWVIYGFVK EHNHVLNPSK IPPRRSHRIA 180 FCEDEKDLKI RELSTELHHE KKKSAAYQEQ LQMVLNYIEE HTQRLSLKVN LVSNNLRELE 240 YED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455905.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_012455907.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_012455908.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_012455909.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A0D2T7X3	0.0	A0A0D2T7X3_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.011G141900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-43	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G141900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]