PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G142000.1

Common Name

B456_011G142000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 228aa MW: 25994.2 Da PI: 6.7234

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G142000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	8.9e-19	66	149	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+ +g +r + C + +++ + +++ +++ +C a+++++++k+g+w+++k+ +HnH+l+ Gorai.011G142000.1 66 FYDDYARQVGFLTRVLSSHKSECDGLLFSRGLGCRGYRDGQTKVEL-----QKQDKQQESCSAMIHLRRDKSGRWVIKKFARDHNHPLV 149 9*******************************876666665555.....78888999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-16	66	149	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
VFFPLHSYSS PSVNGIALNS MGEHVDDVDG RLEDSTVDES NVHDYDTIQE PYVGMIFESE 60 GAAKTFYDDY ARQVGFLTRV LSSHKSECDG LLFSRGLGCR GYRDGQTKVE LQKQDKQQES 120 CSAMIHLRRD KSGRWVIKKF ARDHNHPLVI QLGESRRTLD EEKDKKIQEL TAELRVKKRL 180 SASYREQLLA VVKEVEDHNY NLSMKVQRTL DNLKKLDAEA KEILSGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677729.1	1e-143	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0D2USY3	1e-167	A0A0D2USY3_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.011G142000.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22264	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-55	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G142000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]