PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G151600.1

Common Name

B456_011G151600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 142aa MW: 16669.1 Da PI: 10.8846

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G151600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37	8.3e-12	11	46	1	41
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaee 41 + y+GV+w+ +Wv+e+r+p n+ + r++lg+f t ee Gorai.011G151600.1 11 PVYRGVCWRN-PRKWVSEVREP--NN-KSRIWLGTFPT-EE 46 68*****9.8**8887..44.6********.76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.4E-7	11	46	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.7E-21	12	71	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-16	12	70	IPR016177	DNA-binding domain
SMART	SM00380	2.2E-12	12	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.291	12	69	IPR001471	AP2/ERF domain
CDD	cd00018	4.77E-17	13	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MRKKFRETRH PVYRGVCWRN PRKWVSEVRE PNNKSRIWLG TFPTEEVVVL AHHVATIALR 60 GRSACSNFVD SAWNLPLLAF SNPKDIQKTT AKKRYKERRK HRDGERVYLD EEELFGTQRF 120 WANMAADMLM SPRSGHDGKW V*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636572.1	8e-62	PREDICTED: dehydration-responsive element-binding protein 1D-like isoform X1
Refseq	XP_017636573.1	7e-62	PREDICTED: dehydration-responsive element-binding protein 1D-like isoform X2
Swissprot	Q9FJ93	7e-42	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	A0A0D2RMU8	1e-101	A0A0D2RMU8_GOSRA; Uncharacterized protein
STRING	Gorai.011G151600.1	1e-102	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	3e-44	C-repeat-binding factor 4

Link Out ? help Back to Top
Phytozome	Gorai.011G151600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]