PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G158700.1

Common Name

B456_011G158700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 118aa MW: 13802.9 Da PI: 9.1025

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G158700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.9	1.1e-12	30	78	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ienk r ++fskR + i KK +EL +L + e++ ii+s+tgk y + Gorai.011G158700.1 30 KIIENKDDRLISFSKRCTRIYKKTFELFTLFGSEILFIILSPTGKSYSF 78 579******************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-13	22	81	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.67	22	78	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-17	23	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-12	24	44	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-14	32	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-12	44	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-12	59	80	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MNSIQDELHS EPPESLLGQE NWGRRKIEIK IIENKDDRLI SFSKRCTRIY KKTFELFTLF 60 GSEILFIILS PTGKSYSFGH HFFEIVTKRI LNTNQPLNET THAPFEAYHK LRIHLLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670090.1	1e-35	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_017609592.1	1e-35	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2UJN8	2e-80	A0A0D2UJN8_GOSRA; Uncharacterized protein
STRING	Gorai.011G158700.1	4e-81	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-14	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Gorai.011G158700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]