PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G170200.1

Common Name

B456_011G170200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 219aa MW: 24698.4 Da PI: 7.923

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G170200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.4	2.4e-11	138	181	10	50
G2-like 10 LHerFve.aveqLGGs..ekAtPktilelmkvkgLtlehvkSHL 50 LHe+ ++ av ++ G+ ++AtPk+++elm+v+gLt+++vkSH Gorai.011G170200.1 138 LHECGLSyAVVSIMGPqsNVATPKQMRELMQVDGLTNDEVKSHS 181 56665533454444541268***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-7	149	181	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSPHGTSGSR HINQFPQDTQ TDGYVTARNP YVATQVNISF SNTPVPVIDI PPIQRRLETP 60 YPFLIFVSFF YPHRFLLFFY RYCRSVLISS TFITNPQHCL HRRPISATSD ECCSVQLIDG 120 DGSFNGTGIE SFIKEVKLHE CGLSYAVVSI MGPQSNVATP KQMRELMQVD GLTNDEVKSH 180 SFMSRCLVSV HYFGLKLLVV GICQWKQPCF CSCIPFFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243159	2e-77	AC243159.1 Gossypium hirsutum clone MX146F17-jlq, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457664.1	2e-78	PREDICTED: uncharacterized protein LOC105778495
TrEMBL	A0A0D2RNP6	1e-161	A0A0D2RNP6_GOSRA; Uncharacterized protein
STRING	Gorai.011G170200.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17996	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	4e-09	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G170200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]