PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G172000.1

Common Name

B456_011G172000, LOC105776020

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 176aa MW: 19688 Da PI: 8.1047

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G172000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Gorai.011G172000.1 34 YECTFCKRGFTNAQALGGHMNIH 56 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.9E-6	23	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.53E-7	30	60	No hit	No description
PROSITE profile	PS50157	11.468	34	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0097	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MESAGKRGSS DASSEENEDD QVKCHTGATT KRSYECTFCK RGFTNAQALG GHMNIHRKDR 60 AKAKQPTSSA VLSMNPRYAP TIPTYEPSRH HPIVEAQTQT NHHMYFKPPL SSPRLPYAPA 120 RSPSLSINEE LLNANFSLQI DPTKVDENEM TRKGIMKEGE VDLELRLGHD PYRYN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618363	5e-31	JX618363.1 Gossypium hirsutum clone NBRI_GE63805 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453938.1	1e-130	PREDICTED: transcriptional regulator TAC1
TrEMBL	A0A0D2UUB9	1e-129	A0A0D2UUB9_GOSRA; Uncharacterized protein
STRING	Gorai.011G172000.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9168	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	4e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G172000.1
Entrez Gene	105776020

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]