PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G175600.1

Common Name

B456_011G175600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 228aa MW: 25247.1 Da PI: 7.675

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G175600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	33	53	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+ F+++ L H+ +H Gorai.011G175600.1 33 CRICDHIFTSSRALFDHMELH 53 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	33	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDASRNANMR EAVPLLNHAR REQPGSAEEL IACRICDHIF TSSRALFDHM ELHLLLDEAN 60 AKRQLLLSHM VVAPQSGVSA NHLIQNHPPP PPALQQDSQQ QPRLVVPRQR FVRILPYPPL 120 PSAIHPFLIG AGAPQQWTIR PPLVSYQPVV NQPLPTAPTP SPTAAEVAAT AARQIMRMSR 180 SRTNLFTRPF LNQLEANLLI EGMAAMAERE LEGDCVRDQE VDVTLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D2T9J7	1e-163	A0A0D2T9J7_GOSRA; Uncharacterized protein
STRING	Gorai.011G175600.1	1e-164	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24833	3	4

Link Out ? help Back to Top
Phytozome	Gorai.011G175600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]