PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G198600.2
Common NameB456_011G198600, LOC105776622
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 917aa    MW: 103238 Da    PI: 7.7409
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G198600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.21.1e-51291462118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         ++e k+rwl+++ei+aiL n++ + ++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +n
  Gorai.011G198600.2  29 MEEaKSRWLRPNEIHAILSNYKYFPIHVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDN 119
                         55669************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                         ptf rrcywlL+++le+ivlvhy+e+k
  Gorai.011G198600.2 120 PTFVRRCYWLLDKTLENIVLVHYRETK 146
                         ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81625151IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038594.4E-4631144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.4E-12363449IPR014756Immunoglobulin E-set
SuperFamilySSF484032.8E-18535659IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-7548627IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-17551660IPR020683Ankyrin repeat-containing domain
CDDcd002041.63E-15553657No hitNo description
PROSITE profilePS5029715.99565669IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.155598630IPR002110Ankyrin repeat
SMARTSM002481.7E-6598627IPR002110Ankyrin repeat
SMARTSM002482700637668IPR002110Ankyrin repeat
PROSITE profilePS500966.815746772IPR000048IQ motif, EF-hand binding site
SMARTSM0001560761783IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218762791IPR000048IQ motif, EF-hand binding site
PfamPF006120.22764782IPR000048IQ motif, EF-hand binding site
SMARTSM000150.02784806IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.45785809IPR000048IQ motif, EF-hand binding site
PfamPF006125.2E-4786805IPR000048IQ motif, EF-hand binding site
SMARTSM0001510864886IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242866893IPR000048IQ motif, EF-hand binding site
PfamPF006120.15866886IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN  60
LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP  120
TFVRRCYWLL DKTLENIVLV HYRETKELQG SPATPVNSNS CLTTDQSTPL LVMEDFDSGA  180
ANAYYKDLSD SINANHEMTL HEINTLEWDE LLVTNDGNDS AVSSGDMSTC FDQWNQKMVN  240
GLSNDGGPIS AYNSSPDISL LDNLVDPVAQ SNNAYLNTPG GVCYQTPGTE VNSTVQREDS  300
SAIGMGKSLD LLINNGLESQ DSFGKWINCT VTGSPCSMGD PVPESSSSSG QDSLTSPGEI  360
FSITEVSPAW AYSTEKTKIL VTGVFHQAYQ HLAKSNLFCV CGDVCYPVET IQVGVYRCLL  420
SQHAPGLVKL YMSLDGHKPI SQVLNFEYRA PLLHDPVVPL EDKSRWEEFR LQMRLAYLLF  480
STSKSLSILS GKVSPNSLKE AKKFAQKTSN ISNSWTYLIQ SIEENRASFT QAKDSLFEIA  540
LKNRLKDWLL ERIIYGSKTT EYDAQGQGVI HLCAILGYAW AIYLFSWSGL SLDFRDKHGW  600
TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTTQNPSGCT AADLASLNGY DGLAAYLSEE  660
ALVAQFNDMA LAGNASGSLQ TSRTEATNLV NLKEDELYLR ETLAAYRTAA DAAARINTAF  720
RAHSFKVRAK AVESYNAEEE ARSIIAAMKI QHAFRNYEAK RKMAAAARIQ YRFRTWKMRK  780
DFLNMRRQAI KIQAAFRGFQ ARRQYCKIIW SVGVLEKAIL RWRLRRKGFR GLQITTDEAV  840
EEQRQETYVE EAYYISSRKQ AEERVEKAVV RVQSMFRSKK AQQEYRRMKL AHDLATLEYE  900
SLIGPLSDMM LKDHRK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5884741e-118JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454834.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454835.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454836.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454837.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454838.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454839.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0D2UVG00.0A0A0D2UVG0_GOSRA; Uncharacterized protein
STRINGGorai.011G198600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]