PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G198600.4
Common NameB456_011G198600, LOC105776622
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 844aa    MW: 94935.5 Da    PI: 7.8609
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G198600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1113.61.1e-3527347118
                CG-1  47 vryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                         +r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +nptf rrcywlL+++le+ivlvhy+e+k
  Gorai.011G198600.4   2 LRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPTFVRRCYWLLDKTLENIVLVHYRETK 73 
                         79*******************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143755.697178IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-28173IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-29271IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.27E-12290376IPR014756Immunoglobulin E-set
SuperFamilySSF484032.49E-18462586IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-7475554IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.5E-17478587IPR020683Ankyrin repeat-containing domain
CDDcd002041.46E-15480584No hitNo description
PROSITE profilePS5029715.99492596IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.155525557IPR002110Ankyrin repeat
SMARTSM002481.7E-6525554IPR002110Ankyrin repeat
SMARTSM002482700564595IPR002110Ankyrin repeat
PROSITE profilePS500966.815673699IPR000048IQ motif, EF-hand binding site
SMARTSM0001560688710IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.218689718IPR000048IQ motif, EF-hand binding site
PfamPF006120.2691709IPR000048IQ motif, EF-hand binding site
SMARTSM000150.02711733IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.45712736IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4713732IPR000048IQ motif, EF-hand binding site
SMARTSM0001510791813IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242793820IPR000048IQ motif, EF-hand binding site
PfamPF006120.14793813IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV GNEERIHVYY AHGLDNPTFV RRCYWLLDKT  60
LENIVLVHYR ETKELQGSPA TPVNSNSCLT TDQSTPLLVM EDFDSGAANA YYKDLSDSIN  120
ANHEMTLHEI NTLEWDELLV TNDGNDSAVS SGDMSTCFDQ WNQKMVNGLS NDGGPISAYN  180
SSPDISLLDN LVDPVAQSNN AYLNTPGGVC YQTPGTEVNS TVQREDSSAI GMGKSLDLLI  240
NNGLESQDSF GKWINCTVTG SPCSMGDPVP ESSSSSGQDS LTSPGEIFSI TEVSPAWAYS  300
TEKTKILVTG VFHQAYQHLA KSNLFCVCGD VCYPVETIQV GVYRCLLSQH APGLVKLYMS  360
LDGHKPISQV LNFEYRAPLL HDPVVPLEDK SRWEEFRLQM RLAYLLFSTS KSLSILSGKV  420
SPNSLKEAKK FAQKTSNISN SWTYLIQSIE ENRASFTQAK DSLFEIALKN RLKDWLLERI  480
IYGSKTTEYD AQGQGVIHLC AILGYAWAIY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK  540
MVAVLLSAGA KPNLVTDPTT QNPSGCTAAD LASLNGYDGL AAYLSEEALV AQFNDMALAG  600
NASGSLQTSR TEATNLVNLK EDELYLRETL AAYRTAADAA ARINTAFRAH SFKVRAKAVE  660
SYNAEEEARS IIAAMKIQHA FRNYEAKRKM AAAARIQYRF RTWKMRKDFL NMRRQAIKIQ  720
AAFRGFQARR QYCKIIWSVG VLEKAILRWR LRRKGFRGLQ ITTDEAVEEQ RQETYVEEAY  780
YISSRKQAEE RVEKAVVRVQ SMFRSKKAQQ EYRRMKLAHD LATLEYESLI GPLSDMMLKD  840
HRK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5884741e-118JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454834.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454835.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454836.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454837.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454838.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_012454839.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0D2UVG00.0A0A0D2UVG0_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UVX00.0A0A0D2UVX0_GOSRA; Uncharacterized protein
STRINGGorai.011G198600.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]