PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G201800.1
Common NameB456_011G201800, LOC105776490
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 357aa    MW: 39349.8 Da    PI: 6.7245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G201800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.95e-34193251159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s+fprsYYrCtsagC vkk+vers++dp++v++tYeg+H+h+
  Gorai.011G201800.1 193 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHKHP 251
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.8E-981354IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.0E-35178253IPR003657WRKY domain
SuperFamilySSF1182906.8E-30185253IPR003657WRKY domain
PROSITE profilePS5081133.189188253IPR003657WRKY domain
SMARTSM007742.8E-39193252IPR003657WRKY domain
PfamPF031069.7E-28194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEKKKENLIS MANLRFSDEN PSAVAAAAAA TSFGGSIFDM TTGAGACDGD TKWGSSLGFM  60
DLLGIHQDFI APSLFDSFQP PPILPPPPPS TSSEPLLHQQ LDTKQLQALP SPASIVPESS  120
EVLNNPATPN SSSFSSSSNE AANDHEPTKA EDDEEEEQDQ DKTKKQLKPK KKNQKRQREP  180
RFAFMTKSEV DHLDDGYRWR KYGQKAVKNS PFPRSYYRCT SAGCGVKKRV ERSSDDPSIV  240
VTTYEGQHKH PYPITPRGSI GINMDPSSSF GPSFVVPQPQ YLHQQQQLQP YIYNSSPSLN  300
ITSITRSGSS FNASIPDFLQ DRRFNTPPTS SASLLRDHGL LQDLVPTQMR KEAKEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-281862531077Probable WRKY transcription factor 4
2lex_A4e-281862531077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6095900.0JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBankKF6698550.0KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454615.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ48e-64WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A0D2RQ930.0A0A0D2RQ93_GOSRA; Uncharacterized protein
STRINGGorai.011G201800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-53WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]