PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G204700.1
Common NameB456_011G204700, LOC105777170
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 981aa    MW: 109118 Da    PI: 7.5894
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G204700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.7e-54201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+
  Gorai.011G204700.1  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ ++e+iv+vhy+evk
  Gorai.011G204700.1 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.2E-4821134IPR005559CG-1 DNA-binding domain
CDDcd001025.33E-4442530No hitNo description
Gene3DG3DSA:2.60.40.105.9E-6442530IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.06E-17443529IPR014756Immunoglobulin E-set
PfamPF018339.0E-5443528IPR002909IPT domain
SuperFamilySSF484034.2E-17616727IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.2E-17621730IPR020683Ankyrin repeat-containing domain
CDDcd002049.36E-16621724No hitNo description
PROSITE profilePS5029718.457632736IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-6637727IPR020683Ankyrin repeat-containing domain
SMARTSM002487.0E-4665694IPR002110Ankyrin repeat
PROSITE profilePS5008811.114665697IPR002110Ankyrin repeat
SMARTSM00248220704733IPR002110Ankyrin repeat
SuperFamilySSF525405.58E-9811889IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.6838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242839868IPR000048IQ motif, EF-hand binding site
PfamPF006120.034841859IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0077861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.194862886IPR000048IQ motif, EF-hand binding site
PfamPF006122.9E-4865882IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA  180
STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS  300
DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE  360
PKGIDKNNDE PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL  420
SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGAGTKVL LVGNFLKNKE LPSAAKWGCM  480
FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA  540
VKCTAQEEMH LQVCLAKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE  600
GLILNLLKQK LSQWLIQKVH EDGKGPLILD DKGHGVIHLA ASLGYEWAMN PIVAAGISPN  660
FRDAKGRTAL HWASYFGREE TVIALIKLGA SPGAVDDPTP NFPGGRTAAD LASSRGHKGI  720
AGYLAEANLT THLSSLTVNQ NVVGNDAATK PAQEAIETPS EVAPSNRTLD DNCSLKGSLA  780
AVRKSAHAAA LIQAAFRTRS AHFRQLTKGN DDMSEISLEL GILGSLNRLQ KTSHFGDYLH  840
TAASKIQQKY RGWKGRKEFL KIRNRIVKIQ AHVRGHQVRR QYTKLVWSVG LVEKIILRWR  900
RKGAGLRGFR VQTATNKTVA GIEIDDEYEF LQVGQQQKVD GIEKALARVK SMARDQEARE  960
QYMRLTTKFG ESKVNFQLLL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4685504e-51AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455731.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A0D2RQF70.0A0A0D2RQF7_GOSRA; Uncharacterized protein
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-157Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]