PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G204700.3
Common NameB456_011G204700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 974aa    MW: 108306 Da    PI: 7.3872
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G204700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.72.6e-54201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+
  Gorai.011G204700.3  20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrrcyw+L+ ++e+iv+vhy+evk
  Gorai.011G204700.3 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136
                         ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.81615141IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038596.1E-4821134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.9E-6439527IPR013783Immunoglobulin-like fold
CDDcd001025.29E-4439527No hitNo description
PfamPF018338.9E-5440525IPR002909IPT domain
SuperFamilySSF812961.05E-17440526IPR014756Immunoglobulin E-set
SuperFamilySSF484034.04E-17613724IPR020683Ankyrin repeat-containing domain
CDDcd002049.26E-16618721No hitNo description
Gene3DG3DSA:1.25.40.204.1E-17618727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.457629733IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-6634724IPR020683Ankyrin repeat-containing domain
SMARTSM002487.0E-4662691IPR002110Ankyrin repeat
PROSITE profilePS5008811.114662694IPR002110Ankyrin repeat
SMARTSM00248220701730IPR002110Ankyrin repeat
SuperFamilySSF525405.58E-9808886IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.6835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.242836865IPR000048IQ motif, EF-hand binding site
PfamPF006120.034838856IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0077858880IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.194859883IPR000048IQ motif, EF-hand binding site
PfamPF006122.8E-4862879IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA  180
STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAE SGRNPPGSWL  240
GESNFNHNTV YGSSFWPGSH HLATNNISML DHKLYVEQPT TSDFIIKEAQ VRLHDVSDAV  300
TCGDKLINDG DVQAVGEYPE KLIQELQGHD FNFIGLQSQN YSGPQKVVST SMQNEKEPKG  360
IDKNNDEPGE LKKLDSFGRW MDKEIGGDCD DSLMASDSAN YWSTLNTETD DKEVSSLSRH  420
MQLDIDSLGP SLSQEQLFSI VDFSPDWAYS GAGTKVLLVG NFLKNKELPS AAKWGCMFGE  480
IEVSAEVLTK NVIRCQVPSH VPGRVPFYIT CSNRLACSEV REFEYREKPP GFSFFTAVKC  540
TAQEEMHLQV CLAKLLHTGP GRKWLDCSVE ECDKCKLKSS ICSMGEASAN DCIQSKEGLI  600
LNLLKQKLSQ WLIQKVHEDG KGPLILDDKG HGVIHLAASL GYEWAMNPIV AAGISPNFRD  660
AKGRTALHWA SYFGREETVI ALIKLGASPG AVDDPTPNFP GGRTAADLAS SRGHKGIAGY  720
LAEANLTTHL SSLTVNQNVV GNDAATKPAQ EAIETPSEVA PSNRTLDDNC SLKGSLAAVR  780
KSAHAAALIQ AAFRTRSAHF RQLTKGNDDM SEISLELGIL GSLNRLQKTS HFGDYLHTAA  840
SKIQQKYRGW KGRKEFLKIR NRIVKIQAHV RGHQVRRQYT KLVWSVGLVE KIILRWRRKG  900
AGLRGFRVQT ATNKTVAGIE IDDEYEFLQV GQQQKVDGIE KALARVKSMA RDQEAREQYM  960
RLTTKFGESK DSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4685504e-51AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455732.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
TrEMBLA0A0D2UW740.0A0A0D2UW74_GOSRA; Uncharacterized protein
STRINGGorai.011G204700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-157Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]