PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G204700.5

Common Name

B456_011G204700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 689aa MW: 77004.5 Da PI: 6.211

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G204700.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.4	1.6e-54	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 +e ++rwl++ e+++iL n++k++l+ ++++rp+ gsl L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK+g+v+vl+cyYah++ n+ Gorai.011G204700.5 20 QEaQHRWLRPVEVCEILGNYTKFRLSDKPPSRPSAGSLYLFDRKTIRYFRKDGHDWRKKKDGKTVREAHEKLKIGSVDVLHCYYAHGQFNE 110 5559************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrrcyw+L+ ++e+iv+vhy+evk Gorai.011G204700.5 111 NFQRRCYWMLDGQFEHIVFVHYREVK 136 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.816	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-74	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.7E-48	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.6E-6	442	530	IPR013783	Immunoglobulin-like fold
CDD	cd00102	3.53E-4	442	530	No hit	No description
SuperFamily	SSF81296	6.44E-18	443	529	IPR014756	Immunoglobulin E-set
Pfam	PF01833	5.5E-5	443	528	IPR002909	IPT domain
SuperFamily	SSF48403	4.66E-10	616	685	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.71E-9	621	685	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-9	624	685	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.628	632	685	IPR020683	Ankyrin repeat-containing domain
Pfam	PF13637	9.0E-5	635	685	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF 60 DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML 120 DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA 180 STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG 240 SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS 300 DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE 360 PKGIDKNNDE PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL 420 SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGAGTKVL LVGNFLKNKE LPSAAKWGCM 480 FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA 540 VKCTAQEEMH LQVCLAKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE 600 GLILNLLKQK LSQWLIQKVH EDGKGPLILD DKGHGVIHLA ASLGYEWAMN PIVAAGISPN 660 FRDAKGRTAL HWASYFGRSR LVQYLSYI*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MAQGRRYLPN QQLDLQQILQ EAQHRWLRPV EVCEILGNYT KFRLSDKPPS RPSAGSLYLF  60
DRKTIRYFRK DGHDWRKKKD GKTVREAHEK LKIGSVDVLH CYYAHGQFNE NFQRRCYWML  120
DGQFEHIVFV HYREVKEGYR SGISCLLADP GSLSESLQTG STPSPAHENS PAATIQVSPA  180
STSKIGWNRK TLSSEFEDVD SGDDPSSDAP DQPIYGSKSC TASVEPEVAG FPESGRNPPG  240
SWLGESNFNH NTVYGSSFWP GSHHLATNNI SMLDHKLYVE QPTTSDFIIK EAQVRLHDVS  300
DAVTCGDKLI NDGDVQAVGE YPEKLIQELQ GHDFNFIGLQ SQNYSGPQKV VSTSMQNEKE  360
PKGIDKNNDE PGELKKLDSF GRWMDKEIGG DCDDSLMASD SANYWSTLNT ETDDKEVSSL  420
SRHMQLDIDS LGPSLSQEQL FSIVDFSPDW AYSGAGTKVL LVGNFLKNKE LPSAAKWGCM  480
FGEIEVSAEV LTKNVIRCQV PSHVPGRVPF YITCSNRLAC SEVREFEYRE KPPGFSFFTA  540
VKCTAQEEMH LQVCLAKLLH TGPGRKWLDC SVEECDKCKL KSSICSMGEA SANDCIQSKE  600
GLILNLLKQK LSQWLIQKVH EDGKGPLILD DKGHGVIHLA ASLGYEWAMN PIVAAGISPN  660
FRDAKGRTAL HWASYFGRSR LVQYLSYI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM468550	3e-51	AM468550.2 Vitis vinifera contig VV78X013284.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455732.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
TrEMBL	A0A0D2VPL2	0.0	A0A0D2VPL2_GOSRA; Uncharacterized protein
STRING	Gorai.011G204700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	2e-74	signal responsive 1

Link Out ? help Back to Top
Phytozome	Gorai.011G204700.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]