PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G228000.1

Common Name

B456_011G228000, LOC105776125

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 367aa MW: 39957.9 Da PI: 5.6472

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G228000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	134.7	3.3e-42	146	241	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrl+se+Dei+lL+G++d+ aktg++p+ d+++fy+fvkksi+ +vsk ql++K+rrLKkKfk++v k k+g++p+fsk+h+qk+fels Gorai.011G228000.1 146 LFQRLFSEDDEIALLKGMLDYSAKTGADPHTDMNGFYDFVKKSIHTNVSKVQLMDKVRRLKKKFKNNVGKNKKGEDPTFSKAHEQKAFELS 236 69*************************************************************************************** PP DUF573 93 kkiWg 97 kkiWg Gorai.011G228000.1 237 KKIWG 241 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-36	147	241	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAPKRANPVE VPAPAFSSEE DEEVTSSEEE EEGSSTEEEG EEDPKTKSTP LTHKIPPHRK 60 LETANDESDE SGSDSESESD TAAPVAIATK PGSNKPLASS SKRPGESGLD AKEGKRPKKK 120 VGGEGMATAP VVEEVKRTGE DAKKLLFQRL FSEDDEIALL KGMLDYSAKT GADPHTDMNG 180 FYDFVKKSIH TNVSKVQLMD KVRRLKKKFK NNVGKNKKGE DPTFSKAHEQ KAFELSKKIW 240 GVSGKVESST AKSNGKAKGN NKVVAALKAE LPSSSDKKTD NAVPIEVDIV VSKSYSSLLD 300 MKFSVSDTEV GVVKVGLDMV DGEKKAALEA KWRKLQMAQL ELFVERAEFV TEQAKLALKY 360 YKSEDE*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAPKRANPVE VPAPAFSSEE DEEVTSSEEE EEGSSTEEEG EEDPKTKSTP LTHKIPPHRK  60
LETANDESDE SGSDSESESD TAAPVAIATK PGSNKPLASS SKRPGESGLD AKEGKRPKKK  120
VGGEGMATAP VVEEVKRTGE DAKKLLFQRL FSEDDEIALL KGMLDYSAKT GADPHTDMNG  180
FYDFVKKSIH TNVSKVQLMD KVRRLKKKFK NNVGKNKKGE DPTFSKAHEQ KAFELSKKIW  240
GVSGKVESST AKSNGKAKGN NKVVAALKAE LPSSSDKKTD NAVPIEVDIV VSKSYSSLLD  300
MKFSVSDTEV GVVKVGLDMV DGEKKAALEA KWRKLQMAQL ELFVERAEFV TEQAKLALKY  360
YKSEDE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454073.1	0.0	PREDICTED: mediator-associated protein 1-like
Refseq	XP_012454074.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A0D2TC68	0.0	A0A0D2TC68_GOSRA; Uncharacterized protein
STRING	Gorai.011G228000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	6e-30	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.011G228000.1
Entrez Gene	105776125

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]