PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G240800.3

Common Name

B456_011G240800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1566aa MW: 169867 Da PI: 5.8036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G240800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	657	698	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E e++ + +G++ +++Ia+ + ++t +c+++++k Gorai.011G240800.3 657 PWTSQEKEIFMAKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 698 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.4	1.1e-10	875	915	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ Gorai.011G240800.3 875 HWTDEEKSAFLQAVSSYGKD-FDMISRYVG-TRSRDQCKVFFS 915 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.18E-13	641	702	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.387	653	704	IPR017884	SANT domain
SMART	SM00717	4.0E-7	654	702	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-5	657	698	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.035	871	922	IPR017884	SANT domain
SMART	SM00717	4.5E-9	872	920	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-6	873	916	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.64E-11	873	922	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-8	875	915	IPR001005	SANT/Myb domain
CDD	cd00167	7.10E-8	876	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1566 aa Download sequence Send to blast
MPTYLSHTHS DFVNTWDQLQ KSQHDNKTIA VNGLGTGQKC QSENFVGSID WKPLKWTRSG 60 SLSSRGSGFS HSSSSKSLGG VDSGEGKLEL QQKNLTPVQS PSGDAAACVT SPAPSDETSS 120 RKKPRLAWGE GLAKYEKKKV EGPDTSIDRA GAKISVRNTE FNNFLSSNLA DKSPRVLGFS 180 DCASPATPSS VACSSSPGVE EKSFGKAANV DNDTSNLCGS PTLGSQNHLE GPSFNLEKLD 240 INSIINMGSS LTNLLQADDP CTVDSSFVRS TAISKLLLWK SDVLKALEMT ESEIDSLESE 300 LKLLKGDSRS RCPCPATSSS FPEEHGKACG EQEAASSLIP RPAPLQIDAC GDVLVGKQPL 360 CNGVLEEVND DVKDGDIDSP GTATSKFMEP LSLEKAVSPS DVVKFHECSG DFGTVQLMSM 420 GKVILATGSG NAGTATTISA EGSVLKRIDN DAHVPESSNS DVGDENVMYE MILATNKELA 480 HVASEVFNKL LPKDQYNSEI GNVACTQSDS AIRNKIAIRK QYLRFKERVL TIKFKAFQNA 540 WKEDLRSPSM RKYRAKSQKK YEFSLRSAHG GYQKHRSSIH SRLTSPAGNP ILEPRAEMIN 600 FTSKLLLGSH GRLYRNALKM PALILDEKEK KVSRFISSNG LVEDPCAIEK ERALINPWTS 660 QEKEIFMAKL AAFGKDFRKI ASFLDHKTTA DCVEFYYKNH KSECFEKTKK NDLSKQQGKS 720 AVNTYLLTSG KKRGRELNAA SLDVLGAASV IAAHAESGMR NRHTSGRILL RGRFDSKRSQ 780 LDDSIAERSS NFDIVGSDQD TVAADVLAGI CGSFSSEAMS SCITSSADPG EGYHHDWKCH 840 KVDSVVKRPS TSDVLQNVDG DTCSDESCGE MESSHWTDEE KSAFLQAVSS YGKDFDMISR 900 YVGTRSRDQC KVFFSKARKC LGLDLIHSRT RNMGTPMSDD ANGGETDTED ACVQESSVVC 960 SEKLGSKVEE DLPSTIVSMN VDESDLTREA NLQSDHNISE GNIERLADHK DSVAAEVNFS 1020 NVDHTEPISE CGAGDMDVDS NQAESLHVQN NVALANISAL ENHVAEEGVS VAVSASHGGT 1080 GDCHPSLDAS VEPKSGAAVL STEGFGNNLE AQETLSSKNV MDVRDTRCNA EIDSQVICRP 1140 DLDKSSGESI DKNSCLDFSF NSEGLRQVPL DLGSAGKPSI LLFPNENFSA KNSASHSDAS 1200 QCEKICNQDR LSATLAYQGN EDKQPNNAVS GHEPEHLSGK PSVDLAELQI STLKEMDIDI 1260 GHSQLPEVKR LSTSGKGVTG LYLVQDYLQK CNGPKSPSEF PQLVQNLEQT NSRPKSHSRS 1320 LSDTEKPCRN GNVKLFGQIL NSSSQDDGKI RFPEQSMKSS NLNFRGHNNV DGNASFSKFD 1380 QNIIFAPENV PRRSYGFWDG NRIQTGLSSL PDSEILVAKY PAAFVNYPAS SSQMQLQASR 1440 TIVRNTDRNM NGVSVFTPRE ISSNNGVMDY QVYGGHDCTK VVVPFAMDMK RREMFSEMQR 1500 RNGFDAISNL QHQGRGMVGM NVVGTGVGGV VGGSCPNLSD PVAVLRMQYA KTEQYGGQSG 1560 SIMRE*

Sequence ? help Back to Top

Protein Sequence Length: 1566 aa Download sequence Send to blast

MPTYLSHTHS DFVNTWDQLQ KSQHDNKTIA VNGLGTGQKC QSENFVGSID WKPLKWTRSG  60
SLSSRGSGFS HSSSSKSLGG VDSGEGKLEL QQKNLTPVQS PSGDAAACVT SPAPSDETSS  120
RKKPRLAWGE GLAKYEKKKV EGPDTSIDRA GAKISVRNTE FNNFLSSNLA DKSPRVLGFS  180
DCASPATPSS VACSSSPGVE EKSFGKAANV DNDTSNLCGS PTLGSQNHLE GPSFNLEKLD  240
INSIINMGSS LTNLLQADDP CTVDSSFVRS TAISKLLLWK SDVLKALEMT ESEIDSLESE  300
LKLLKGDSRS RCPCPATSSS FPEEHGKACG EQEAASSLIP RPAPLQIDAC GDVLVGKQPL  360
CNGVLEEVND DVKDGDIDSP GTATSKFMEP LSLEKAVSPS DVVKFHECSG DFGTVQLMSM  420
GKVILATGSG NAGTATTISA EGSVLKRIDN DAHVPESSNS DVGDENVMYE MILATNKELA  480
HVASEVFNKL LPKDQYNSEI GNVACTQSDS AIRNKIAIRK QYLRFKERVL TIKFKAFQNA  540
WKEDLRSPSM RKYRAKSQKK YEFSLRSAHG GYQKHRSSIH SRLTSPAGNP ILEPRAEMIN  600
FTSKLLLGSH GRLYRNALKM PALILDEKEK KVSRFISSNG LVEDPCAIEK ERALINPWTS  660
QEKEIFMAKL AAFGKDFRKI ASFLDHKTTA DCVEFYYKNH KSECFEKTKK NDLSKQQGKS  720
AVNTYLLTSG KKRGRELNAA SLDVLGAASV IAAHAESGMR NRHTSGRILL RGRFDSKRSQ  780
LDDSIAERSS NFDIVGSDQD TVAADVLAGI CGSFSSEAMS SCITSSADPG EGYHHDWKCH  840
KVDSVVKRPS TSDVLQNVDG DTCSDESCGE MESSHWTDEE KSAFLQAVSS YGKDFDMISR  900
YVGTRSRDQC KVFFSKARKC LGLDLIHSRT RNMGTPMSDD ANGGETDTED ACVQESSVVC  960
SEKLGSKVEE DLPSTIVSMN VDESDLTREA NLQSDHNISE GNIERLADHK DSVAAEVNFS  1020
NVDHTEPISE CGAGDMDVDS NQAESLHVQN NVALANISAL ENHVAEEGVS VAVSASHGGT  1080
GDCHPSLDAS VEPKSGAAVL STEGFGNNLE AQETLSSKNV MDVRDTRCNA EIDSQVICRP  1140
DLDKSSGESI DKNSCLDFSF NSEGLRQVPL DLGSAGKPSI LLFPNENFSA KNSASHSDAS  1200
QCEKICNQDR LSATLAYQGN EDKQPNNAVS GHEPEHLSGK PSVDLAELQI STLKEMDIDI  1260
GHSQLPEVKR LSTSGKGVTG LYLVQDYLQK CNGPKSPSEF PQLVQNLEQT NSRPKSHSRS  1320
LSDTEKPCRN GNVKLFGQIL NSSSQDDGKI RFPEQSMKSS NLNFRGHNNV DGNASFSKFD  1380
QNIIFAPENV PRRSYGFWDG NRIQTGLSSL PDSEILVAKY PAAFVNYPAS SSQMQLQASR  1440
TIVRNTDRNM NGVSVFTPRE ISSNNGVMDY QVYGGHDCTK VVVPFAMDMK RREMFSEMQR  1500
RNGFDAISNL QHQGRGMVGM NVVGTGVGGV VGGSCPNLSD PVAVLRMQYA KTEQYGGQSG  1560
SIMRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-16	615	706	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-16	615	706	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012454301.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
Refseq	XP_012454302.1	0.0	PREDICTED: uncharacterized protein LOC105776280 isoform X1
TrEMBL	A0A0D2RSC9	0.0	A0A0D2RSC9_GOSRA; Uncharacterized protein
STRING	Gorai.011G240800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G240800.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]