PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G254200.1

Common Name

B456_011G254200, LOC105778705

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 180aa MW: 19890.6 Da PI: 8.9229

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G254200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0015	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Gorai.011G254200.1 90 HECSICGLEFSIGQALGGHMRRH 112 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.35E-9	44	112	No hit	No description
Pfam	PF13912	2.3E-12	45	70	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.31	46	68	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.159	46	73	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.6E-10	89	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.66	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKRSFASEME NNLALANCLM LLSQGRNQYD HTIFNDTNNN NPTRVFECKT CNRQFASFQA 60 LGGHRASHKK PKLLDGGSTE NQPPAKPKTH ECSICGLEFS IGQALGGHMR RHRGGLSGNH 120 HQYGPLSSSS SSQEMVTTPI VKKSNSRRVL CLDLNLTPLE NDWELFKLGK AALPIDCFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457912.1	1e-132	PREDICTED: zinc finger protein ZAT12-like
Refseq	XP_016724658.1	1e-132	PREDICTED: zinc finger protein ZAT12-like
TrEMBL	A0A0D2RSU3	1e-131	A0A0D2RSU3_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8MGE3	1e-131	A0A1U8MGE3_GOSHI; zinc finger protein ZAT12-like
TrEMBL	A0A2P5Q7K3	1e-131	A0A2P5Q7K3_GOSBA; Uncharacterized protein
STRING	Gorai.011G254200.1	1e-132	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-30	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G254200.1
Entrez Gene	105778705

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]