PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G255600.2

Common Name

B456_011G255600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 295aa MW: 33374.7 Da PI: 9.6164

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G255600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.7e-05	187	225	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rR +++ +++ L++l+ + +K + a++Le+A YIk L Gorai.011G255600.2 187 RRSQKLSDKITALQKLVSPY-----GKTDIASVLEEASLYIKLL 225 7999************99.....9**************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.309	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-7	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-6	187	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKKNPNQLLI MRNALLSSLP LPSQFYNIGN NEAQMSYLDV LMRMETIGRN VEVDDAFSSE 60 SKTFNNGDQL GYGAFAAPYQ SHFNSDLRDH QFGSVNFGTY FQPSMSLNNK LAIPHFESDI 120 QNLQNGRKRP SIEFHQEQAP LNPTIALNEW NKNKRKKVSS FQQQQPAQQN IETVPGISDS 180 RLNMPVRRSQ KLSDKITALQ KLVSPYGKTD IASVLEEASL YIKLLHQHIQ NLFQMLRRSY 240 NSLGAIHPPQ ETEKKKQDLR GRGLCLVPIS FAQKVTEEEK TIDTNSISGT NNHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453819.1	0.0	PREDICTED: transcription factor bHLH123-like
TrEMBL	A0A0D2UXZ1	0.0	A0A0D2UXZ1_GOSRA; Uncharacterized protein
STRING	Gorai.011G255600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G255600.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]