PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G267700.1
Common NameB456_011G267700, LOC105775903
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 218aa    MW: 24150.3 Da    PI: 4.4962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G267700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.6e-387106199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasn +kll +lp ++r+da+ +++yeA ar+rdP+yG+v++i++lqqq++ l
  Gorai.011G267700.1   7 SCGACKFLRRKCTNECVFAPYFCYDEaANHFAAVHKVFGASNASKLLLHLPIHNRSDAAITIAYEALARIRDPIYGCVAHIFALQQQVAGL 97 
                         6***********************9878*************************************************************** PP

              DUF260  91 kaelallke 99 
                         ++e+++l +
  Gorai.011G267700.1  98 QEEIETLIN 106
                         ***998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0456108IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-367103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTGLGCSCGA CKFLRRKCTN ECVFAPYFCY DEAANHFAAV HKVFGASNAS KLLLHLPIHN  60
RSDAAITIAY EALARIRDPI YGCVAHIFAL QQQVAGLQEE IETLINQMAN HAVEVPIEAV  120
QFGSIDETMN TLYYQDEQAT LLNLQGSITG NQVVHSQLCE EDSAQHSFKW VEDSKFLSNI  180
HENPYEISFE GLEFGDLIDY PCMGNTGIPS NWEIPIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531127115LOB family transfactor Ramosa2.1
5ly0_B2e-3531127115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453851.11e-163PREDICTED: LOB domain-containing protein 33
RefseqXP_016717070.11e-163PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS87e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0D2UYI01e-162A0A0D2UYI0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LR781e-162A0A1U8LR78_GOSHI; LOB domain-containing protein 33-like
STRINGGorai.011G267700.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-56LOB domain-containing protein 33
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]