PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G278500.1

Common Name

B456_011G278500, LOC105776883

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 414aa MW: 44754 Da PI: 6.3521

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G278500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++Iar ++ gR++k+c++rw + Gorai.011G278500.1 60 KGPWSPEEDAVLSRLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 105 79****************************.*********985 PP
2	Myb_DNA-binding	56.6	5.9e-18	112	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ Gorai.011G278500.1 112 RKPFTDEEDRIIISAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 156 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.342	55	106	IPR017930	Myb domain
SuperFamily	SSF46689	5.39E-31	58	153	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-15	59	108	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-17	60	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-26	61	113	IPR009057	Homeodomain-like
CDD	cd00167	1.29E-14	62	104	No hit	No description
PROSITE profile	PS51294	26.922	107	161	IPR017930	Myb domain
SMART	SM00717	2.0E-17	111	159	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-16	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	3.28E-13	114	157	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-24	114	160	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEDEKESNRQ DSPAAGGSGS GSGGDELELI VAESELGGGG GSGVGGGGGS SSNNNNTRVK 60 GPWSPEEDAV LSRLVAKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED 120 RIIISAHAIH GNKWASIAKL LPGRTDNAIK NHWNSTLRRR CMELGRFKPG PADTMEDGSF 180 ERTKASSEET LSVGDVNHFK HLEGRDMVMD DRPNLQEDKP PIQEDQFAIE PKNHPAVCRP 240 VARVSAFSRY NTPSSSKTES GMTSRIPVQG PLAQSSRPDW GVGKILEDLR CEPIIPLRCG 300 FGCCSTPCGG HSRTSLLGPE FVDYEEPHVF SSHELISIAT DLNNIAWIKS GLENSCVRIP 360 SNATSQRMSQ GSDIHTKSDP MCFTDGQSKL TGMSTEVLPT QTCTMRSEVE GLS*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEDEKESNRQ DSPAAGGSGS GSGGDELELI VAESELGGGG GSGVGGGGGS SSNNNNTRVK  60
GPWSPEEDAV LSRLVAKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED  120
RIIISAHAIH GNKWASIAKL LPGRTDNAIK NHWNSTLRRR CMELGRFKPG PADTMEDGSF  180
ERTKASSEET LSVGDVNHFK HLEGRDMVMD DRPNLQEDKP PIQEDQFAIE PKNHPAVCRP  240
VARVSAFSRY NTPSSSKTES GMTSRIPVQG PLAQSSRPDW GVGKILEDLR CEPIIPLRCG  300
FGCCSTPCGG HSRTSLLGPE FVDYEEPHVF SSHELISIAT DLNNIAWIKS GLENSCVRIP  360
SNATSQRMSQ GSDIHTKSDP MCFTDGQSKL TGMSTEVLPT QTCTMRSEVE GLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-40	59	160	6	107	B-MYB
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012455281.1	0.0	PREDICTED: myb-like protein B
Swissprot	Q42575	2e-88	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A0D2TEM9	0.0	A0A0D2TEM9_GOSRA; Uncharacterized protein
STRING	Gorai.011G278500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5638	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-111	myb domain protein 109

Link Out ? help Back to Top
Phytozome	Gorai.011G278500.1
Entrez Gene	105776883

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]