PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G279700.1

Common Name

B456_011G279700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 187aa MW: 20842.6 Da PI: 10.4795

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G279700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.4	1.4e-12	64	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+ l++ ++k++G+g+W+ I+r + +t+ q+ s+ qky Gorai.011G279700.1 64 PWTIEEHRLFLLGIKKYGKGDWRNISRNFVDSKTPTQVASHAQKY 108 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.37	57	113	IPR017930	Myb domain
SuperFamily	SSF46689	2.47E-15	59	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-15	60	109	IPR006447	Myb domain, plants
SMART	SM00717	2.8E-9	61	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-11	62	112	IPR009057	Homeodomain-like
CDD	cd00167	1.56E-9	64	108	No hit	No description
Pfam	PF00249	4.0E-10	64	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSILDIILLS IRFNKGIKKD DIWKSTVSDS SFTLELVDNN DFYACRKSSN GAKGPNHERK 60 KGIPWTIEEH RLFLLGIKKY GKGDWRNISR NFVDSKTPTQ VASHAQKYQK WKLSRGKDEK 120 KPGIHDVTVL DLTGTTVFSD DRKPPSANQS NVASQQKPAS MSKTSPNDGS ATVFGLVNGQ 180 YVKTRL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012453652.1	1e-122	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	3e-38	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D2TEP0	1e-135	A0A0D2TEP0_GOSRA; Uncharacterized protein
STRING	Gorai.011G279700.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM36936	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05790.1	4e-38	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G279700.1

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]