PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G286700.1
Common NameB456_011G286700, LOC105775740
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 150aa    MW: 16617 Da    PI: 7.2913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G286700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.7e-18595190
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                        f kvlt+ dv k+  l +p++ ++++   +g  ++sk + ++de+g +W++++ y   ++  ++ vl++GW++Fv  +g+ +gD ++F  d +
  Gorai.011G286700.1  5 FSKVLTNTDVEKR--LAVPNNSLKHFeleNG--NCSKSVEVKDEKGSTWTFRC-YvrsDGAYKKPVLSSGWRQFVVNKGVHQGDLITFCKDVE 92
                        8899*99999986..9*******77786444..49999***************.52334444459***********************84433 PP

                        SEE CS
                  B3 88 sef 90
                         e+
  Gorai.011G286700.1 93 AEA 95
                        444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.873105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-16498IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-17494IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-214101No hitNo description
SMARTSM010192.2E-65105IPR003340B3 DNA binding domain
PfamPF023624.7E-15598IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MTILFSKVLT NTDVEKRLAV PNNSLKHFEL ENGNCSKSVE VKDEKGSTWT FRCYVRSDGA  60
YKKPVLSSGW RQFVVNKGVH QGDLITFCKD VEAEATYKII VQRKIKLLGK EFWCSPEPEQ  120
PTDATAQVIQ APADATGEVI QSLAVLPDV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453664.11e-108PREDICTED: B3 domain-containing transcription factor NGA2-like
TrEMBLA0A0D2UZ021e-107A0A0D2UZ02_GOSRA; Uncharacterized protein
STRINGGorai.011G286700.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-12B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]