PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G291500.1
Common NameB456_011G291500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 169aa    MW: 18918 Da    PI: 9.5803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G291500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.3e-40111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slvyeAear+rdPvyG++g i  lq+++ +l+
  Gorai.011G291500.1  11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLRDPVYGCIGAIALLQRKMIELQ 101
                         6****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++lal++++
  Gorai.011G291500.1 102 HDLALARAR 110
                         ****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.44410111IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST  120
GVAGTELDRL TVTGLGMKLR ICYNIYIISG DEGRKKFLEG QKIILQSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4761226122LOB family transfactor Ramosa2.1
5ly0_B3e-4761226122LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719179.11e-120PREDICTED: LOB domain-containing protein 21-like isoform X1
SwissprotQ9SRL81e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0D2RUE21e-120A0A0D2RUE2_GOSRA; Uncharacterized protein
STRINGGorai.011G291500.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.12e-61LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]