PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.011G292100.1

Common Name

B456_011G292100, LOC105778418

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 239aa MW: 26284.9 Da PI: 8.6809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.011G292100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	64	110	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriNs + Lr+l+Pk+ K++Ka+ L A+e +k+L Gorai.011G292100.1 64 KSHSEAEKRRRDRINSQLTALRKLIPKS-----NKMDKAALLGSAIEQVKDL 110 79***********************7.....5***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.555	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-14	64	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-11	64	113	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-15	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-12	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	6.03E-6	142	212	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.3E-5	142	203	No hit	No description
PROSITE profile	PS51671	8.803	144	220	IPR002912	ACT domain
CDD	cd04873	1.79E-7	145	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MENCYPFSLL EPPNCDGCNA AAISNEPPFV VPWPVEPLFS ASSSVRCHGF TSPAIPDKAT 60 VASKSHSEAE KRRRDRINSQ LTALRKLIPK SNKMDKAALL GSAIEQVKDL KRKATEIGKA 120 FAIPSETDEV SVDYNVPEDK TFIRVSICCD DRPEVFSELI RVLKGLRLSI VEAEISSVGG 180 RTKSNLILCN ESDNREGVSS NLKQSLNVVV NKINALSSDE SKSNYRIRSK RQRLFLSS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457563.1	1e-173	PREDICTED: transcription factor bHLH51
Swissprot	Q9XEF0	1e-51	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A0D2TF81	1e-172	A0A0D2TF81_GOSRA; Uncharacterized protein
STRING	Gorai.011G292100.1	1e-172	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.011G292100.1
Entrez Gene	105778418

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]