PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G009000.2
Common NameB456_012G009000, LOC105779492
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1097aa    MW: 121598 Da    PI: 6.4506
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G009000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.5e-23131232199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       ++k+++  +l  +d++ ++W++++iyr+k++r++lt+GW+ Fv+ ++L +gD+v+F  
  Gorai.012G009000.2 131 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMQKPAQ--ELEARDLHENVWKFRHIYRGKPQRHLLTTGWSLFVSGKRLFAGDSVLFI- 218
                         99*****************************95444444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Gorai.012G009000.2 219 -RDETQQLLLGIRRA 232
                         .5578889***9997 PP
2Auxin_resp1171.6e-38257340183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+W +L+
  Gorai.012G009000.2 257 AAHAAANNSPFTVFYNPRASLSEFVIPLAKYYKAVYnHQISPGMRFRMMFETEESGTRRYMGTITGISDIDPVRWKNSQWHNLQ 340
                         79********************************9879*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-41122260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40122246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-18130222No hitNo description
PROSITE profilePS5086311.885131233IPR003340B3 DNA binding domain
SMARTSM010199.8E-23131233IPR003340B3 DNA binding domain
PfamPF023626.1E-21131232IPR003340B3 DNA binding domain
PfamPF065075.4E-34257340IPR010525Auxin response factor
PfamPF023091.2E-69821069IPR033389AUX/IAA domain
PROSITE profilePS5174527.029841068IPR000270PB1 domain
SuperFamilySSF542777.46E-79971062No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1097 aa     Download sequence    Send to blast
MGERELTDGC LSDDAGEAPE RRHINPELWQ ACAGPLVNLP AAGTHVVYFP QGHSEQVAAS  60
MKRDVDAQIL NYPNLPSKLL CLLHNVTLHA DPETDEVYAQ MTLQPVSSFD KEALLRSDLS  120
LKSNKPQPEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQKPAQE LEARDLHENV  180
WKFRHIYRGK PQRHLLTTGW SLFVSGKRLF AGDSVLFIRD ETQQLLLGIR RANRQPANLS  240
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASLSEF VIPLAKYYKA VYNHQISPGM  300
RFRMMFETEE SGTRRYMGTI TGISDIDPVR WKNSQWHNLQ VGWDESTAGE RRNRVSIWEI  360
EPVTAPFFIC PSPLFRSKRP RQPGMPADEY SDLDNLFKRP MPWLGDDICL KDSDAHPGLS  420
LVQWMNMQQN PLLANSMQPN FMQSLAGSTM QNFDGADLSH QMGLSAPQMP QPNNLQFNAH  480
RLPQKVQQLD QVPKLPSTMN SLGSIIQPQQ LNDMTQQSRQ NLVAQPLPSS QVLQPQALVQ  540
SNNILQQQQT SNPTHQLPLS LPQNLQQHLV GPNHLQNLMH SQLPDPLNQH LQVPDNQVQF  600
QLMQKLQQQQ QLLLAQQSAL QQPGQLAQPQ DQQRQLLDAS QSFSSSVTAS QVLEMPQNIP  660
TLLPQSNVAP QQMPKNNSQA NVWFSQPPLQ SKVQQQQTGM LPEVPGLVGP FQTTATNQFS  720
TAVSSVMMSA AVAAPSVITD DNPSCSTSPS TNCPSVLQPM IDSRVHRSTG LGDDISQSTA  780
TVLNPNAVET MSTKANMVKE QQQKSVKPLL NISKSQNQGS FAPQNCINGA TAHADCLDTS  840
SSTTSVCLSQ SDVHLHQNTP SYNPQTMLLR DTSQDGEVQA YPRNSVSYGN NMDSQIEMSM  900
NSDTLSAKGM MGLGKDFSNH LSSGGVLASY ENPKDTQQEL SSSMVSQSYR VPDMAFNSID  960
PTINHSSFIN RSGWTPPSQF QRLRTYTKVY KRGAVGRSID ITRYSGYDEL KQDLARRFGI  1020
EGQLEDRGRV GWKLVYVDHE NDVLLVGDDP WEEFINCVRC IKILSPQEVQ QMSVDGEFGN  1080
SVLPNQACSS SGNGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582436151388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1539840.0DQ153984.1 Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458726.10.0PREDICTED: auxin response factor 19-like isoform X3
TrEMBLA0A0D2V0860.0A0A0D2V086_GOSRA; Auxin response factor
STRINGGorai.012G009000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]