PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G010900.4

Common Name

B456_012G010900, LOC105780460

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 308aa MW: 33658.7 Da PI: 8.4677

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G010900.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.9	5.4e-31	158	214	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 de++YVNaKQy +Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF Gorai.012G010900.4 158 DETIYVNAKQYGAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 214 699*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.1E-36	156	217	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.631	157	217	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-25	160	214	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.7E-21	160	182	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	162	182	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.7E-21	191	214	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MESHVQQSSM SESLNLNMGI VPQHFHNSKQ LSFQFQDQDS SSTQSTGQSY PEAASVGDSN 60 LYRQSSISAS SGGNETPGKL VEHHAKLASS MGTQEYVFSP SQVDYSKSIQ AHIPLHYAEP 120 YFGGVVTAVC PPQAMIHHPC MLAMLPARVP LPLELTEDET IYVNAKQYGA ILRRRQYRAK 180 LEAQNKLIKV RKPYLHESRH LHALKRARGN GGRFLNTKKL QESKPIPTSH GLDASRSPQL 240 HLCANMSNQL ENYKDAASTT TCSDVTSASN SDEMLQQPDF RFSGYSSLIA GATRGSGGNL 300 HHLSGCG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-19	158	218	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460269.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_012460270.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_012460272.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X3
Refseq	XP_012460273.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X3
Swissprot	Q93ZH2	1e-76	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0D2V053	0.0	A0A0D2V053_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2V0C1	0.0	A0A0D2V0C1_GOSRA; Uncharacterized protein
STRING	Gorai.012G010900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-71	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.012G010900.4
Entrez Gene	105780460

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]