PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G016100.1
Common NameB456_012G016100, LOC105780177
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 120aa    MW: 13212.3 Da    PI: 4.3525
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G016100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.83.2e-162371146
              RWP-RK 11 skyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46
                        + +Fslp+ dAA++Lgvc++vLK+iCR++G++RW h
  Gorai.012G016100.1  2 ADFFSLPLDDAASTLGVCTSVLKKICRENGLDRWLH 37
                        579*******************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.252165IPR003035RWP-RK domain
PfamPF020421.3E-13335IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MADFFSLPLD DAASTLGVCT SVLKKICREN GLDRWLHCKP DAGLAAAILM QNLSRISMAA  60
TAYSKGELEY AAYLSDQVTY LFDKMEECLG IVLLEALQNG ATVLDLKKLE NLFYYIFDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459805.15e-83PREDICTED: uncharacterized protein LOC105780177 isoform X1
RefseqXP_012459806.15e-83PREDICTED: uncharacterized protein LOC105780177 isoform X1
TrEMBLA0A0D2V0L21e-81A0A0D2V0L2_GOSRA; Uncharacterized protein
STRINGGorai.012G016100.12e-82(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.24e-08Nin-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]