PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G028600.2

Common Name

B456_012G028600, LOC105780731

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 402aa MW: 44003.7 Da PI: 8.7843

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G028600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	10	36	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.012G028600.2 10 PGEPDCSYYIRTGLCRFGATCRFNHPP 36 5789*********************97 PP
2	zf-CCCH	39	1.4e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.012G028600.2 57 QPECQYYLKTGTCKFGATCKFHHPR 81 799********************96 PP
3	zf-CCCH	36.7	7e-12	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.012G028600.2 103 ETECAYYLRTGQCKFGSTCKFHHPQ 127 578********************97 PP
4	zf-CCCH	36.5	8.2e-12	265	288	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+++tG Ck+G+ C+F+H++ Gorai.012G028600.2 265 LECQFYMKTGDCKFGAVCRFHHPR 288 58********************96 PP
5	zf-CCCH	40.9	3.4e-13	308	334	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Gorai.012G028600.2 308 PGEPLCIFYSRYGICKFGPSCKFNHPM 334 589**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.1E-5	9	36	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.587	9	37	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-8	11	36	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	14	37	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-4	15	35	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-6	54	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.356	54	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-10	57	81	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	58	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-5	60	81	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.338	100	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	100	127	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	101	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-9	103	127	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	106	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-4	261	288	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	261	289	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.73E-5	265	290	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-8	265	288	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	267	289	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-7	307	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	307	335	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-10	309	334	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-6	310	334	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-4	312	332	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEPGPYPERP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AITTARMKGE FPERVGQPEC 60 QYYLKTGTCK FGATCKFHHP RDKAGIAGRV SLNFLGYPLR PNETECAYYL RTGQCKFGST 120 CKFHHPQPTN MMVSLRGSPI YPTFPSPTTS GQQSFLGGLT NWSRASFIPS PRWQGPSSYA 180 PLILPQGMVS VPSWNAYGGQ LASVSSSENL QQTNGNNQIY GTSRPNESAS AGSQALFSQF 240 RSGSAPVGFY ALQRENVFPE RPGELECQFY MKTGDCKFGA VCRFHHPRER VLPAPDCILS 300 PIGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGVFTFN YSASSPFEAP VHRLLGSSSG 360 SGGINLSSEG LVEAGSTKPR RLSLSENRQL SSSDDSIDTE G*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEPGPYPERP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AITTARMKGE FPERVGQPEC  60
QYYLKTGTCK FGATCKFHHP RDKAGIAGRV SLNFLGYPLR PNETECAYYL RTGQCKFGST  120
CKFHHPQPTN MMVSLRGSPI YPTFPSPTTS GQQSFLGGLT NWSRASFIPS PRWQGPSSYA  180
PLILPQGMVS VPSWNAYGGQ LASVSSSENL QQTNGNNQIY GTSRPNESAS AGSQALFSQF  240
RSGSAPVGFY ALQRENVFPE RPGELECQFY MKTGDCKFGA VCRFHHPRER VLPAPDCILS  300
PIGLPLRPGE PLCIFYSRYG ICKFGPSCKF NHPMGVFTFN YSASSPFEAP VHRLLGSSSG  360
SGGINLSSEG LVEAGSTKPR RLSLSENRQL SSSDDSIDTE G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460673.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
Refseq	XP_012460674.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
Swissprot	Q9SWF9	0.0	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A0D2THG6	0.0	A0A0D2THG6_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2VUP9	0.0	A0A0D2VUP9_GOSRA; Uncharacterized protein
STRING	Gorai.012G028600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-164	zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.012G028600.2
Entrez Gene	105780731

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]