PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G031100.1

Common Name

B456_012G031100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 228aa MW: 24936.3 Da PI: 9.533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G031100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	174	220	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq Gorai.012G031100.1 174 HSLAERVRREKISERMKYLQDLVPGC----NKITGKASMLDEIINYVQSLQ 220 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	167	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-10	167	224	No hit	No description
PROSITE profile	PS50888	15.904	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-16	170	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-8	174	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGGASGDSVL PDMVMARQVK PDPGLESPWP ELGKVDMAAM GFGPCGYGNG PSFDMNHAIS 60 RTSSYPPAVV ATKAVEVKGN YEKMASAVGK ESFNKRKAEK LQNSNVVAEE SKRIKACEDE 120 GEESKITGPN TNKSSNNKKE ASGDASKENS KVFEVQKPDF IHVWARRGQA TDRHSLAERV 180 RREKISERMK YLQDLVPGCN KITGKASMLD EIINYVQSLQ RKVEVKK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:23221598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269\|PubMed:23221598}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU532258	1e-143	EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBank	EU532302	1e-143	EU532302.1 Gossypium barbadense clone I11-4 ISSR marker genomic sequence.
GenBank	EU532309	1e-143	EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBank	EU532313	1e-143	EU532313.1 Gossypium barbadense clone I11-15 ISSR marker genomic sequence.
GenBank	EU532316	1e-143	EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016750993.1	1e-163	PREDICTED: transcription factor HBI1-like
Refseq	XP_016750994.1	1e-163	PREDICTED: transcription factor HBI1-like
Swissprot	Q9ZPW3	1e-45	HBI1_ARATH; Transcription factor HBI1
TrEMBL	A0A0D2VUR7	1e-167	A0A0D2VUR7_GOSRA; Uncharacterized protein
STRING	Gorai.012G031100.1	1e-168	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5947	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18300.1	5e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G031100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]