PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G036100.1

Common Name

B456_012G036100, LOC105779242

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 205aa MW: 23729 Da PI: 5.3195

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G036100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.2	9.6e-34	12	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF Ptdeelv ++L +k + ++ ++i+e+d+++++Pw+L+ k+ + k+++fFs++ +nr+ ++gyWk+ +++ Gorai.012G036100.1 12 LPPGFRFCPTDEELVLHFLYPKSLRLPCYS-NIIPELDLHRLHPWELDGKALMSGKRYFFFSQK--------MENRVLENGYWKQLDMEEP 93 79***********************988.89**********96555556666666665........3589*********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s ++ +vg+kk + fy g ap g kt+Wvm+ey+l Gorai.012G036100.1 94 IFSGGSGKVGVKKLFEFYIGGAPFGMKTNWVMQEYHL 130 9****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-42	7	161	IPR003441	NAC domain
PROSITE profile	PS51005	38.717	12	164	IPR003441	NAC domain
Pfam	PF02365	3.8E-21	13	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEMEDGRSVN HLPPGFRFCP TDEELVLHFL YPKSLRLPCY SNIIPELDLH RLHPWELDGK 60 ALMSGKRYFF FSQKMENRVL ENGYWKQLDM EEPIFSGGSG KVGVKKLFEF YIGGAPFGMK 120 TNWVMQEYHL CNWGSALSFH YPKTKGIRKL DSNYKWVLCK VEEHKGNAQS FNYSDEDGSE 180 LSCLDEMFLS LDDDLDDISS SHFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-31	12	169	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-31	12	169	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-31	12	169	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-31	12	169	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	12	169	20	173	NAC domain-containing protein 19
3swm_B	1e-31	12	169	20	173	NAC domain-containing protein 19
3swm_C	1e-31	12	169	20	173	NAC domain-containing protein 19
3swm_D	1e-31	12	169	20	173	NAC domain-containing protein 19
3swp_A	1e-31	12	169	20	173	NAC domain-containing protein 19
3swp_B	1e-31	12	169	20	173	NAC domain-containing protein 19
3swp_C	1e-31	12	169	20	173	NAC domain-containing protein 19
3swp_D	1e-31	12	169	20	173	NAC domain-containing protein 19
4dul_A	1e-31	12	169	17	170	NAC domain-containing protein 19
4dul_B	1e-31	12	169	17	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578970	8e-86	JX578970.1 Gossypium hirsutum clone NBRI_GE11114 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458466.1	1e-151	PREDICTED: NAC domain-containing protein 68-like isoform X2
TrEMBL	A0A0D2V174	1e-150	A0A0D2V174_GOSRA; Uncharacterized protein
STRING	Gorai.012G036100.1	1e-150	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-40	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Gorai.012G036100.1
Entrez Gene	105779242

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]