PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G040700.1
Common NameB456_012G040700, LOC105781060
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 319aa    MW: 35573 Da    PI: 7.3398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G040700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33179236259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers edp+vv++tYeg+Hnh+
  Gorai.012G040700.1 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTSPKCGVKKRVERSFEDPSVVITTYEGKHNHH 236
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-35163238IPR003657WRKY domain
SuperFamilySSF1182901.57E-29171238IPR003657WRKY domain
PROSITE profilePS5081132.305173238IPR003657WRKY domain
SMARTSM007743.1E-39178237IPR003657WRKY domain
PfamPF031062.7E-26179236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSSNEKNDPQ HNYDPFQGFN RSTTFPFFDD NSPCIYNQSA AAPPPAFDPS YMTFTDCLNG  60
SNVIDYNSFS RAFDMSCSSS DVVSPMDDNT ATDNSKKIPT CADNNNNISE NPSTPNSSVS  120
SSSNEDEDSS KAKKDKQPKG CEDHGDDKSK KVNKATKKEK RQKEPRFAFL TKSEIDHLED  180
GYRWRKYGQK AVKNSPYPRS YYRCTSPKCG VKKRVERSFE DPSVVITTYE GKHNHHIPAT  240
LRGHAAGMFS PPIMSGSMGP TFPHEFLTHF LPSSSNNPAA HANSMHHQTQ QQQQQQLQVP  300
DYGLLQDLVS SFTRSQAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-321712391078Probable WRKY transcription factor 4
2lex_A4e-321712391078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384560.0KM438456.1 Gossypium aridum WRKY17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461087.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ21e-56WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A0D2VV520.0A0A0D2VV52_GOSRA; Uncharacterized protein
STRINGGorai.012G040700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-55WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  5. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]