PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G046200.1

Common Name

B456_012G046200, LOC105779510

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 197aa MW: 21763.7 Da PI: 9.1879

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G046200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.6	3.3e-29	21	75	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 vrYkeClkNhA+++Gg+a+DGCgEfm++ g+eg+ +al C+AC+CHRnFH +e+e Gorai.012G046200.1 21 VVRYKECLKNHAVAIGGNATDGCGEFMAN-GKEGSLEALICSACNCHRNFHQKETE 75 69************************8.999******************987 PP
2	Homeobox	15	4.4e-05	129	185	1	53
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 +r Rt+f++ q e + ++ e + +++++++ ++ +++g++ r+ kvW +N ++ Gorai.012G046200.1 129 KRFRTKFSQAQKEKMLSFAEkagwRIQKLDENAVQQFCQEIGIKRRVLKVWMHNNKQ 185 789*********987655666678**************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-20	22	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.7E-28	22	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.9E-28	23	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.135	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.7E-29	119	188	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.45E-19	122	186	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-26	128	185	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSDNKPISTS GDGGDNCNKV VVRYKECLKN HAVAIGGNAT DGCGEFMANG KEGSLEALIC 60 SACNCHRNFH QKETECSGCC PSDYGRKLML GHLQSYMLRS SPQPMTLSYK GGGSIPSETN 120 EKDDGKVRKR FRTKFSQAQK EKMLSFAEKA GWRIQKLDEN AVQQFCQEIG IKRRVLKVWM 180 HNNKQSFANK NNISAA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	129	186	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269\|PubMed:22319055}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM462067	3e-39	AM462067.2 Vitis vinifera contig VV78X194955.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458744.1	1e-147	PREDICTED: zinc-finger homeodomain protein 4-like
Swissprot	Q9M9S0	1e-62	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	A0A0D2V1U9	1e-145	A0A0D2V1U9_GOSRA; Uncharacterized protein
STRING	Gorai.012G046200.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	6e-65	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Gorai.012G046200.1
Entrez Gene	105779510

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]