PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G074000.1

Common Name

B456_012G074000, LOC105780288

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 207aa MW: 23364 Da PI: 5.1349

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G074000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	131.1	4e-41	19	103	33	117
CG-1 33 rpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 + + g+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LK+g e +++ Yah+e+n+tf rrcywlL+++le+ivlvhy+e+ Gorai.012G074000.1 19 TLQGGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKIGDKERIHVDYAHGEDNSTFVRRCYWLLDKSLEQIVLVHYRET 103 6789*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	55.465	1	109	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.9E-41	6	104	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.9E-35	21	102	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEDGGCASLV GAEIHGFHTL QGGTIVLFDR KMLRNFRKDG YNWKKKKDGK TIKEAHEHLK 60 IGDKERIHVD YAHGEDNSTF VRRCYWLLDK SLEQIVLVHY RETNEVSLAT HSNSSLLIDQ 120 STPLLVTEEF DSGIANTYSE EPGESVNVRN HEMKLLEINT LEWDELLVAN GANDSIASRG 180 DNVSCFDQQN QMAVNDFSNY VSRTIS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:12218065, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459974.1	1e-153	PREDICTED: calmodulin-binding transcription activator 6-like isoform X1
Swissprot	Q9LSP8	8e-64	CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBL	A0A0D2V3B4	1e-152	A0A0D2V3B4_GOSRA; Uncharacterized protein
STRING	Gorai.012G074000.1	1e-153	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	5e-64	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Gorai.012G074000.1
Entrez Gene	105780288

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]