PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G074000.2

Common Name

B456_012G074000, LOC105780288

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 189aa MW: 21596.1 Da PI: 5.5963

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G074000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	133.8	5.8e-42	2	85	34	117
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LK+g e +++ Yah+e+n+tf rrcywlL+++le+ivlvhy+e+ Gorai.012G074000.2 2 PKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKIGDKERIHVDYAHGEDNSTFVRRCYWLLDKSLEQIVLVHYRET 85 9*********************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	58.008	1	91	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-38	1	86	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.2E-37	2	84	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MPKSGTIVLF DRKMLRNFRK DGYNWKKKKD GKTIKEAHEH LKIGDKERIH VDYAHGEDNS 60 TFVRRCYWLL DKSLEQIVLV HYRETNEVSL ATHSNSSLLI DQSTPLLVTE EFDSGIANTY 120 SEEPGESVNV RNHEMKLLEI NTLEWDELLV ANGANDSIAS RGDNVSCFDQ QNQMAVNDFS 180 NYVSRTIS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:12218065, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459975.1	1e-139	PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
Swissprot	Q9LSP8	1e-58	CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBL	A0A0D2VWL7	1e-138	A0A0D2VWL7_GOSRA; Uncharacterized protein
STRING	Gorai.012G074000.1	1e-135	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	6e-63	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Gorai.012G074000.2
Entrez Gene	105780288

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]