PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G080500.1
Common NameB456_012G080500, LOC105780952
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 465aa    MW: 52293.4 Da    PI: 5.9965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G080500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.44.4e-140454601373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ s  ++ +e+ ++klf+e++P+l
  Gorai.012G080500.1  45 LIRLLVACANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALANRMLKAWPGLHKALNSTKIS--SVPDEMLVQKLFFELCPFL 133
                         5799************************************************************999998..599**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++NqaI+ea+ege++vHiiD++  +++QW++L+q++++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ +
  Gorai.012G080500.1 134 KLAYIITNQAIVEAMEGEKMVHIIDLNSCEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-I 219
                         **********************************************************....9**************************.5 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..................................................desvslese 223
                         + +le+l+le+Lrvk+gEalaV++vlqlh+ll                                                   +s++ + +
  Gorai.012G080500.1 220 VCKLENLDLESLRVKTGEALAVSSVLQLHSLLatddevprrnfnsppvsktrvlqmtqrtfgewlekepvhiynpssdiassPSSLAPAPK 310
                         788****************************************************************************865333333336 PP

                GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                           ++L +++ lsPkv+vv+eqe++hn+++++er++eal++y+alfd+le++++r+  er+kvE++l+g+ei+n++aceg er+erhe+lek
  Gorai.012G080500.1 311 MGSFLAALRALSPKVMVVTEQESNHNGSTLMERVIEALNFYAALFDCLESTVSRAPIERQKVEKMLFGEEIKNIIACEGGERKERHEKLEK 401
                         999**************************************************************************************** PP

                GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         W  rle aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaW
  Gorai.012G080500.1 402 WILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKMKEENGCLVMCWQERPLYSISAW 460
                         *********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.90619441IPR005202Transcription factor GRAS
PfamPF035141.5E-13745460IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MIPEGPSPVT SSPLQFFPWM SPSPGIGSPF PWLWELKPEE RGLWLIRLLV ACANHVAAGS  60
LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALANRMLKA WPGLHKALNS TKISSVPDEM  120
LVQKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLN SCEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LATDDEVPRR NFNSPPVSKT RVLQMTQRTF GEWLEKEPVH IYNPSSDIAS  300
SPSSLAPAPK MGSFLAALRA LSPKVMVVTE QESNHNGSTL MERVIEALNF YAALFDCLES  360
TVSRAPIERQ KVEKMLFGEE IKNIIACEGG ERKERHEKLE KWILRLELAG FGRVPLSYHG  420
MLQAGRLLQT NNYDGYKMKE ENGCLVMCWQ ERPLYSISAW GFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-683746010377Protein SCARECROW
5b3h_D4e-683746010377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460946.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D2V3J40.0A0A0D2V3J4_GOSRA; Uncharacterized protein
STRINGGorai.012G080500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]