PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G083100.1

Common Name

B456_012G083100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 436aa MW: 48779.7 Da PI: 5.2598

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G083100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.3e-08	16	56	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + +C +++k++ l+C ++ lC C ++ H+ H Gorai.012G083100.1 16 MSVCHFCNSKPAVLYCSADSARLCLFCDQQVHSAnalslkH 56 789*****************************655666666 PP
2	zf-B_box	20.1	1.3e-06	59	92	3	36
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36 ++C+ ++ k++++ C ++ +lC+dC ++H+ Gorai.012G083100.1 59 SQICDGCKAKPASFLCSIDNLMLCHDCDWSSHNK 92 689*****************************64 PP
3	CCT	62.4	1.4e-21	385	429	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R++a+lRYkeK+k+R+++K+irYesRK++A++R+R KGrFvk++e Gorai.012G083100.1 385 RDNAMLRYKEKKKHRRYDKQIRYESRKTRADTRKRFKGRFVKASE 429 899***************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.641	14	61	IPR000315	B-box-type zinc finger
SMART	SM00336	4.1E-9	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.2E-6	16	58	IPR000315	B-box-type zinc finger
CDD	cd00021	1.07E-5	18	49	No hit	No description
PROSITE profile	PS50119	9.101	57	116	IPR000315	B-box-type zinc finger
CDD	cd00021	6.25E-4	61	87	No hit	No description
SMART	SM00336	3.1	62	116	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	14.733	385	427	IPR010402	CCT domain
Pfam	PF06203	1.1E-15	385	427	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MMMSRVPKPK PRRSTMSVCH FCNSKPAVLY CSADSARLCL FCDQQVHSAN ALSLKHVRSQ 60 ICDGCKAKPA SFLCSIDNLM LCHDCDWSSH NKNNNNINSS SSSNSCVSAM HERAPVEGFS 120 GRPSVVELAS LFGFDLKPKD LMNLIPGFSL YERELMNLED FMVPEEENSC VSSALISSVK 180 LDHEVYRQLV DMGKRDLVRG SGDGAELGPG TPPITSAEQE NFATFEVENG DDEEQLQQQT 240 PFTSLLTLQS DDVLRQNDYV AEGELVWDCK SSYLPSQIWD FQSERSKDCE ESGAEDAGFV 300 KGCSFFRNNT CNEPFSSCKP TTEESNNVGV VGSLSDSKVV ESLETPTCDS TRYVQVMEHP 360 IVGGSEVMNY EAKTNVDMEP LAQNRDNAML RYKEKKKHRR YDKQIRYESR KTRADTRKRF 420 KGRFVKASEA PDVRV*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MMMSRVPKPK PRRSTMSVCH FCNSKPAVLY CSADSARLCL FCDQQVHSAN ALSLKHVRSQ  60
ICDGCKAKPA SFLCSIDNLM LCHDCDWSSH NKNNNNINSS SSSNSCVSAM HERAPVEGFS  120
GRPSVVELAS LFGFDLKPKD LMNLIPGFSL YERELMNLED FMVPEEENSC VSSALISSVK  180
LDHEVYRQLV DMGKRDLVRG SGDGAELGPG TPPITSAEQE NFATFEVENG DDEEQLQQQT  240
PFTSLLTLQS DDVLRQNDYV AEGELVWDCK SSYLPSQIWD FQSERSKDCE ESGAEDAGFV  300
KGCSFFRNNT CNEPFSSCKP TTEESNNVGV VGSLSDSKVV ESLETPTCDS TRYVQVMEHP  360
IVGGSEVMNY EAKTNVDMEP LAQNRDNAML RYKEKKKHRR YDKQIRYESR KTRADTRKRF  420
KGRFVKASEA PDVRV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393602	5e-58	GQ393602.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0567 SSR marker CGR5610 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460934.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBL	A0A0D2TKT8	0.0	A0A0D2TKT8_GOSRA; Uncharacterized protein
STRING	Gorai.012G083100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19226	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-69	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	Gorai.012G083100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]