PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G083700.1

Common Name

B456_012G083700, LOC105780919

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 207aa MW: 23364.7 Da PI: 8.9112

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G083700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.7	4.8e-32	3	119	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +p GfrFhPtdeelvv+yLk+k+ + +l++ +vi+e+d++ ++Pw+Lp +v +++ yfFs+r + + gyWk gk+k+ Gorai.012G083700.1 3 MPIGFRFHPTDEELVVHYLKRKALSLPLPA-SVISEFDVLGTHPWSLPGEV---NEKRYFFSSRGRDGG--------GSGGYWKPIGKEKP 81 699*************************.99***********554...4578*988654........368******* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++e+vg+++ L+f + ++ ++t+W++h+yrl Gorai.012G083700.1 82 IIETgSNEVVGMRRALIFCGRKPSNHTNTRWFLHQYRL 119 9967778********77888899*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-39	2	144	IPR003441	NAC domain
PROSITE profile	PS51005	39.6	3	144	IPR003441	NAC domain
Pfam	PF02365	9.6E-20	4	119	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MKMPIGFRFH PTDEELVVHY LKRKALSLPL PASVISEFDV LGTHPWSLPG EVNEKRYFFS 60 SRGRDGGGSG GYWKPIGKEK PIIETGSNEV VGMRRALIFC GRKPSNHTNT RWFLHQYRLL 120 HFNSTQMVKG EMDGDWLVFQ VFQRKRKARK HAAKMATCID FTAEDCPVFY PPPPPTSPSS 180 SEITEVSPNG LDEEESSSFI TSCIRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-24	1	150	18	174	NAC domain-containing protein 19
3swm_B	2e-24	1	150	18	174	NAC domain-containing protein 19
3swm_C	2e-24	1	150	18	174	NAC domain-containing protein 19
3swm_D	2e-24	1	150	18	174	NAC domain-containing protein 19
3swp_A	2e-24	1	150	18	174	NAC domain-containing protein 19
3swp_B	2e-24	1	150	18	174	NAC domain-containing protein 19
3swp_C	2e-24	1	150	18	174	NAC domain-containing protein 19
3swp_D	2e-24	1	150	18	174	NAC domain-containing protein 19
3ulx_A	2e-24	1	150	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	149	QRKRKARK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847237	0.0	KC847237.1 Gossypium hirsutum NAC domain protein NAC60 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460910.1	1e-154	PREDICTED: NAC transcription factor ONAC010-like
TrEMBL	A0A0D2TKW7	1e-153	A0A0D2TKW7_GOSRA; Uncharacterized protein
STRING	Gorai.012G083700.1	1e-154	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-36	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Gorai.012G083700.1
Entrez Gene	105780919

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]