PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G085100.1

Common Name

B456_012G085100, LOC105779260

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 198aa MW: 22692.7 Da PI: 9.9003

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G085100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.6e-33	113	170	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H+h+ Gorai.012G085100.1 113 EDGYRWRKYGQKAVKNSKFPRSYYRCTHQGCNVKKQVQRLSKDQSIVVTTYEGIHTHP 170 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-35	97	170	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-30	104	171	IPR003657	WRKY domain
PROSITE profile	PS50811	29.459	107	172	IPR003657	WRKY domain
SMART	SM00774	3.4E-40	112	171	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	113	170	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MENKYQMFFP ISSPASSAAY DPFTTNIMAP TSPHVFNNFH GNSSNGLMDL KTDQKFVKKA 60 AEVKEPVDQN GSFVGSEADY HLKSSAATDK KKEKMIRKPR YAFQTRSEVD ILEDGYRWRK 120 YGQKAVKNSK FPRSYYRCTH QGCNVKKQVQ RLSKDQSIVV TTYEGIHTHP IHNPTDNFEH 180 ILSQMHVYTP LFKPIHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	102	171	7	76	Probable WRKY transcription factor 4
2lex_A	1e-26	102	171	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669846	0.0	KF669846.1 Gossypium hirsutum WRKY transcription factor 99 (WRKY99) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458479.1	1e-149	PREDICTED: probable WRKY transcription factor 75 isoform X1
TrEMBL	A0A0D2V3W4	1e-147	A0A0D2V3W4_GOSRA; Uncharacterized protein
STRING	Gorai.012G085100.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-53	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Gorai.012G085100.1
Entrez Gene	105779260

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]