PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G090000.1
Common NameB456_012G090000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14415.7 Da    PI: 10.412
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G090000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.2e-161053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        r e+   rq  +skR++gilKKA+EL +LC+++va++  s++g+
  Gorai.012G090000.1 10 RLEDLKARQAKYSKRKTGILKKAKELNILCEVDVALLFSSPSGR 53
                        5678889**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.063161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-21180IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-22160IPR002100Transcription factor, MADS-box
CDDcd002662.19E-19285No hitNo description
PRINTSPR004045.5E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161156IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGRKKIKIQR LEDLKARQAK YSKRKTGILK KAKELNILCE VDVALLFSSP SGRPTLFVGK  60
NSNGLSSILK RLPNLSFEER EERRAYTIEM LKKTYENSES EFDPLSLSHD TNADTLKVNG  120
FPKLEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458186.11e-75PREDICTED: MADS-box transcription factor 18-like
TrEMBLA0A0D2V4472e-85A0A0D2V447_GOSRA; Uncharacterized protein
STRINGGorai.012G090000.14e-86(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-26AGAMOUS-like 65
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]