PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G090200.3
Common NameB456_012G090200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20225.5 Da    PI: 10.4457
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G090200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        r e+   rq  +skR++gilKKA+EL +LC+++va++  s++g+
  Gorai.012G090200.3 10 RLEDLKARQAKYSKRKTGILKKAKELNILCEVDVALLFSSPSGR 53
                        5678889**********************************996 PP
2K-box14.21.9e-061211544881
               K-box  48 lkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                         +++++ +e++L +sl+  Rs+Kn+l +eq  + +
  Gorai.012G090200.3 121 INQIKMMEDHLIESLNGLRSRKNQLTIEQQIRER 154
                         578899*******************998865544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.726161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-21160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-20180IPR002100Transcription factor, MADS-box
CDDcd002663.58E-19285No hitNo description
PRINTSPR004042.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-161156IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRKKLKIQR LEDLKARQAK YSKRKTGILK KAKELNILCE VDVALLFSSP SGRPTLFVGK  60
NSNGLSSILK RLSNLSFEER EERRAYTIEL YEDELQELKH KLVQKSKILR DWRNPNNVED  120
INQIKMMEDH LIESLNGLRS RKNQLTIEQQ IRERESEVGL SISMKLFMHF QL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458186.11e-106PREDICTED: MADS-box transcription factor 18-like
TrEMBLA0A0D2S0881e-120A0A0D2S088_GOSRA; Uncharacterized protein
STRINGGorai.012G090200.11e-114(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-25AGAMOUS-like 65
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]