PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G090600.1
Common NameB456_012G090600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9162.07 Da    PI: 11.3195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G090600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.5e-141650842
                        HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         rq  + kR+ gilKKA+ELS+L d+ev +++ s+
  Gorai.012G090600.1 16 ARQAKYLKRKRGILKKAKELSILFDVEVVLLLSST 50
                        69999***********************9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.759150IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-13160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-18163IPR002100Transcription factor, MADS-box
CDDcd001201.25E-12258No hitNo description
PRINTSPR004041.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-121554IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGRIKLKIQR LEIMKARQAK YLKRKRGILK KAKELSILFD VEVVLLLSST FTKPTFFCWS  60
RPREGLYNGG MSRYPVLN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448418.18e-23PREDICTED: truncated transcription factor CAULIFLOWER A-like
RefseqXP_016681153.11e-23PREDICTED: agamous-like MADS-box protein AGL65
SwissprotQ7X9I07e-15AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0D2RWR83e-49A0A0D2RWR8_GOSRA; Uncharacterized protein
STRINGGorai.012G090600.15e-50(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-17AGAMOUS-like 65
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]