PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G094200.1

Common Name

B456_012G094200, LOC105781058

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 206aa MW: 22352.5 Da PI: 5.2422

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G094200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.7	1.5e-41	61	160	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGas+++k l++lpe++reda+ss+vyeA r+rdPvyG++g i++lq+q++ l+ Gorai.012G094200.1 61 PCAACKILRRRCVDKCVLAPYFPPTEPSKFIIAHRVFGASHIIKSLQELPESQREDAVSSMVYEASSRIRDPVYGCAGAIFQLQKQVSDLQ 151 7**************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Gorai.012G094200.1 152 AQLAKAQAE 160 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.369	60	161	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-41	61	158	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MENNERGSIS PISIPTTFSY SPSSSFSSPL SQFSPSLPSP DSQSSSPPRA AAASPQLVLS 60 PCAACKILRR RCVDKCVLAP YFPPTEPSKF IIAHRVFGAS HIIKSLQELP ESQREDAVSS 120 MVYEASSRIR DPVYGCAGAI FQLQKQVSDL QAQLAKAQAE VVTLQCQQAN VLTLILEMSQ 180 SKEPIDTTCF LDDTCIVSPW EPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	60	168	10	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	60	168	10	118	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461085.1	1e-147	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	9e-70	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0D2V498	1e-145	A0A0D2V498_GOSRA; Uncharacterized protein
STRING	Gorai.012G094200.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-71	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Gorai.012G094200.1
Entrez Gene	105781058

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]