PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G096200.1

Common Name

B456_012G096200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 184aa MW: 21140.1 Da PI: 10.6054

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G096200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	23.6	1.3e-07	88	119	9	53
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 ++++ Wv + ++lg+f++ae Aa a+++a+ + Gorai.012G096200.1 88 RHSTRNWV-----W--------VWLGTFDSAEAAASAYDQAAFST 119 33467777.....7........9******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	8.6E-8	60	135	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.142	63	129	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-10	87	131	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.5E-13	89	130	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEEFFQFHSS STSPDFSPES LFRSPSVETL SGRWDELLLN FNDFEAMVWV GGYGGGLGSV 60 QERRKGRRCR IGYCQTGRVT QGRESLRRHS TRNWVWVWLG TFDSAEAAAS AYDQAAFSTK 120 GLSAMLNFPV EVVRESLRSI KFRCDQVCSP VLALKRRHWI GKTRQIFNLI KFVYLPRPKR 180 RNF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703946.1	1e-50	PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBL	A0A0D2V4B0	1e-133	A0A0D2V4B0_GOSRA; Uncharacterized protein
STRING	Gorai.012G096200.1	1e-133	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	1e-15	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Gorai.012G096200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]