PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G117300.1

Common Name

B456_012G117300, LOC105779443

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 172aa MW: 19075.6 Da PI: 8.6808

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G117300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.4e-09	56	96	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P +K++ +++L +A++Y+k L Gorai.012G117300.1 56 ARERRHRISDRFKILQSMVPGG-----TKMDTVSMLDEAIHYVKFL 96 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	52	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.20E-13	53	100	No hit	No description
SMART	SM00353	2.2E-12	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-12	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	56	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDYFPSANFS SSFIDGSSSV TTTSNNSSSC SKEKKKAGKK GKGAVKLSTD PQSVAARERR 60 HRISDRFKIL QSMVPGGTKM DTVSMLDEAI HYVKFLKTQI WLHQAMINFV DDDSSSLFLP 120 TSFPVETNIY PSSNPNPNLE PMQPSQLLPL PDSCFQGPQQ TMPYDAYMRH Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP236113	0.0	KP236113.1 Gossypium hirsutum ROX-like transcription factor (ROX) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458653.1	1e-126	PREDICTED: transcription factor bHLH140-like
Refseq	XP_016739551.1	1e-126	PREDICTED: transcription factor bHLH140-like
TrEMBL	A0A0D2VYF0	1e-124	A0A0D2VYF0_GOSRA; Uncharacterized protein
TrEMBL	A0A0E3Z8Z0	1e-124	A0A0E3Z8Z0_GOSHI; ROX-like transcription factor
STRING	Gorai.012G117300.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15290	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	4e-33	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Gorai.012G117300.1
Entrez Gene	105779443

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]