PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G118000.1

Common Name

B456_012G118000, LOC105779447

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 540aa MW: 61060.3 Da PI: 5.2378

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G118000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	142.2	5.2e-44	166	538	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL + +a +++++ la+ +L +se +p g++++R+a+ + + ++++ + y ++s s++ a+++f++++P+ +f Gorai.012G118000.1 166 HLLKAHGDATEKNQTDLAEVILRCVSEKGNPVGETLERIAFNLSQDIQNQNNY-----Y----LMQES---SKNFEVAFRTFYQIFPYGRF 244 778888899999***************************876666665544.....2....22333...45677889******** PP GRAS 94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +h++aN+aIlea+ ++ e++Hi+Dfd++ G+QWp+L++a+a + +lR+T ++ + +s + ++t++ L + A+++g++f+ + + Gorai.012G118000.1 245 AHFAANSAILEAIPNDaEQLHIVDFDLGVGIQWPSLIEAIAGHW-QHKTLRLTSIKWGDDHSPWRFQHTRRLLCDHARSFGLNFKVEEM-- 332 *********99889*******************975.5589****9999********************9997.. PP GRAS 184 krledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvksl...........sPkvvvvveqe.....adhnsesF 253 ++dl e +++k+ +E la n+++ l ++ + ++++ +e+L + k+l + ++++ e + d +++sF Gorai.012G118000.1 333 -GIHDLVNEFMAIKKqgggtKEWLAFNCMVGLPHMGK--NKSRKLVNEFLGIAKQLltscgdnarttKRGMITLGEGDaceklKDGTGSSF 420 .7777766667777777888**********983..33333345666666655222222111114456788777743332233556 PP GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGF......kpvplsekaakqa 337 + f l +y a+++s+e++++++ ++r +E ++g++i+ ++kW+e+ e++ F + +++s +++a Gorai.012G118000.1 421 GAYFNAQLMHYQAIMESMESNMAKHLvQARLAMECLFVGPNICAQAW------------FQKWKEMNETCYFqagttlEGLKVSRGRVMEA 499 *******************988878**********975544............445555554444311111156889999* PP GRAS 338 klllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 k ++++ + + y+v ++ ++l+l W++ +Lv vS+Wr Gorai.012G118000.1 500 KEMVKERG-NSYEVSiggDSGNELTLDWRGITLVKVSSWR 538 **99.44888877788999**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.726	138	539	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-41	166	538	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MFIYYFIYTY AKIQSKTNFA LNITKMMQSQ DFTPSWPLVN STIDQLEPYG FNMCVHFDAS 60 SSFHTSVDSF FSNDIFPFSP YDFDDDLLRV TVPWEDISAP LAGLDSMLTD GVEESFPLSS 120 QRQDIWSPCP SIRSSEASTD TMQSPLTMPI LGEEAMEIDN QLPLFHLLKA HGDATEKNQT 180 DLAEVILRCV SEKGNPVGET LERIAFNLSQ DIQNQNNYYL MQESSKNFEV AFRTFYQIFP 240 YGRFAHFAAN SAILEAIPND AEQLHIVDFD LGVGIQWPSL IEAIAGHWQH KTLRLTSIKW 300 GDDHSPWRFQ HTRRLLCDHA RSFGLNFKVE EMGIHDLVNE FMAIKKQGGG TKEWLAFNCM 360 VGLPHMGKNK SRKLVNEFLG IAKQLLTSCG DNARTTKRGM ITLGEGDACE KLKDGTGSSF 420 GAYFNAQLMH YQAIMESMES NMAKHLVQAR LAMECLFVGP NICAQAWFQK WKEMNETCYF 480 QAGTTLEGLK VSRGRVMEAK EMVKERGNSY EVSIGGDSGN ELTLDWRGIT LVKVSSWRN*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MFIYYFIYTY AKIQSKTNFA LNITKMMQSQ DFTPSWPLVN STIDQLEPYG FNMCVHFDAS  60
SSFHTSVDSF FSNDIFPFSP YDFDDDLLRV TVPWEDISAP LAGLDSMLTD GVEESFPLSS  120
QRQDIWSPCP SIRSSEASTD TMQSPLTMPI LGEEAMEIDN QLPLFHLLKA HGDATEKNQT  180
DLAEVILRCV SEKGNPVGET LERIAFNLSQ DIQNQNNYYL MQESSKNFEV AFRTFYQIFP  240
YGRFAHFAAN SAILEAIPND AEQLHIVDFD LGVGIQWPSL IEAIAGHWQH KTLRLTSIKW  300
GDDHSPWRFQ HTRRLLCDHA RSFGLNFKVE EMGIHDLVNE FMAIKKQGGG TKEWLAFNCM  360
VGLPHMGKNK SRKLVNEFLG IAKQLLTSCG DNARTTKRGM ITLGEGDACE KLKDGTGSSF  420
GAYFNAQLMH YQAIMESMES NMAKHLVQAR LAMECLFVGP NICAQAWFQK WKEMNETCYF  480
QAGTTLEGLK VSRGRVMEAK EMVKERGNSY EVSIGGDSGN ELTLDWRGIT LVKVSSWRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-15	182	538	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458654.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0D2V5H5	0.0	A0A0D2V5H5_GOSRA; Uncharacterized protein
STRING	Gorai.012G118000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	9e-22	GRAS family protein

Link Out ? help Back to Top
Phytozome	Gorai.012G118000.1
Entrez Gene	105779447

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]