PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G134200.5
Common NameB456_012G134200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20923 Da    PI: 9.4275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G134200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.3e-27959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifs+tgk+  y++
  Gorai.012G134200.5  9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTTGKMCQYCT 59
                        79**********************************************986 PP
2K-box78.31.9e-2672166295
               K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         qk +g+   e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLe++Le+s+ k+R++Knell +q+++l++ke+ l+een
  Gorai.012G134200.5  72 QKVTGTCiPEHDNREHLYNELAVLRKETRRLQLSMRRYTGEDMSSIPFEELDQLEHELERSVIKVRERKNELLQQQLDNLRRKERILEEEN 162
                         55555555677899***************************************************************************** PP

               K-box  92 kaLr 95 
                          ++ 
  Gorai.012G134200.5 163 SNMY 166
                         9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
CDDcd002654.15E-39276No hitNo description
SuperFamilySSF554559.29E-31277IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-2481168IPR002487Transcription factor, K-box
PROSITE profilePS5129714.9385174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST TGKMCQYCTE  60
GYRMEQIIER YQKVTGTCIP EHDNREHLYN ELAVLRKETR RLQLSMRRYT GEDMSSIPFE  120
ELDQLEHELE RSVIKVRERK NELLQQQLDN LRRKERILEE ENSNMYRWVS KWFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18171169MEF2C
5f28_B2e-18171169MEF2C
5f28_C2e-18171169MEF2C
5f28_D2e-18171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364430.0HM236443.1 Gossypium hirsutum MADS27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459843.11e-122PREDICTED: protein TRANSPARENT TESTA 16-like
RefseqXP_016679920.11e-122PREDICTED: protein TRANSPARENT TESTA 16-like
SwissprotQ9ATE51e-72FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A0D2VZ121e-125A0A0D2VZ12_GOSRA; Uncharacterized protein
STRINGEOX990961e-114(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]