PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G147800.1

Common Name

B456_012G147800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 20964.1 Da PI: 10.293

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G147800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.1	1.1e-08	25	53	21	49
HHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyey 49 +KK +ELS+LC+++++ i+fs+ g+ + + Gorai.012G147800.1 25 IKKISELSILCGTKILFIVFSPAGNPFSF 53 59********************9986665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.7E-9	9	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.37E-13	9	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-9	25	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.937	25	57	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MASVRKKTRG RQKIEIKMIG NKESIKKISE LSILCGTKIL FIVFSPAGNP FSFCFPSIES 60 VANQFLNENV LVNGNTSTPI EANHMVRLNK LIQHYNEVHN QMEASKEKQK VLVMAQGTSG 120 TDSTNHWWET PIEKHNSREL HELYSRFSEL INLFHTARRK KIAINFPMLA PTYSGYNHSR 180 GQF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483076.1	3e-57	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A0D2V5J1	1e-134	A0A0D2V5J1_GOSRA; Uncharacterized protein
STRING	Gorai.012G147800.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-19	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Gorai.012G147800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]