PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G151200.1
Common NameB456_012G151200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 125aa    MW: 14009.2 Da    PI: 7.5025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G151200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.8e-10492188
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87
                        f+kvlt+ d  ++  l+lp +++++    +  ++++ +l+++d  g  W++ +  + +sg      + +GW +Fv+ ++L++gD +v++ d++
  Gorai.012G151200.1  4 FIKVLTKIDIERT--LSLPDSCLQAApqlQ-RSHGGEKLQVKDDVGILWNFHC--TIRSGVfpkLDIVSGWIQFVRFKQLNTGDAIVLYKDDD 91
                        8899988888876..9******98889863.3347779***************..7777776667788********************95544 PP

                        S CS
                  B3 88 s 88
                        +
  Gorai.012G151200.1 92 T 92
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-10392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-12392IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-123104No hitNo description
PfamPF023622.1E-8491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAIFIKVLTK IDIERTLSLP DSCLQAAPQL QRSHGGEKLQ VKDDVGILWN FHCTIRSGVF  60
PKLDIVSGWI QFVRFKQLNT GDAIVLYKDD DTLTGPHYKI EVLKGHGDDY SSFAQMYIKS  120
CYAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.16e-73PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A0D2UZK32e-87A0A0D2UZK3_GOSRA; Uncharacterized protein
STRINGGorai.012G151200.14e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1896848
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]